Pseudomonas maumuensis: KSS90_12530
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Entry
KSS90_12530 CDS
T07719
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmam
Pseudomonas maumuensis
Pathway
pmam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSS90_12530 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmam03400
]
KSS90_12530 (ligD)
Enzymes [BR:
pmam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSS90_12530 (ligD)
DNA repair and recombination proteins [BR:
pmam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSS90_12530 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
SL4P
Motif
Other DBs
NCBI-ProteinID:
QXH58989
LinkDB
All DBs
Position
complement(2778683..2781154)
Genome browser
AA seq
823 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRGRTGKAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQARSETDYSIVEALPDSVL
SDRTLPPRRPAKTATPNKRKAKASLVALPDRLQPQLATLVDSPPSGDWHYEVKFDGYRIL
ARIEGADVRLFTRNGHDWSAKMPRQVEALKALELDSAWLDGEMVVVDDQGVADFQALQNA
FDTEHDECITYYLFDLPYLGGEDLRQLPLQARRTTLARLLENTPSDLLKFSADFTEPVDS
LLDSACRLKLEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRNAFGALL
LALHDNDSGQLRYAGKVGTGFSTTTLDSLHARLKPLEVDKPALPKPPRGAEARGVHWLKP
QLLAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQPPAEPLGSLRLTH
PDRVVDASNGTTKRQVAEYYAQVADWLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLHI
PALRSYSKAQAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDKPDRFVLDLDPDPA
LPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHM
AGLFPERLSAVSGPRNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQL
KGANQWHIGNLQARLAEVDDPWADMAKTRQSITVRMRKQLGIA
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaacgccacgcccgaacct
gccggcaaacgcggccgcacgggcaaggcccatgccttgcagttctgcattcagaaacac
gacgccagtcacctgcactacgactttcgcctggaactcgatggcaccttgaaaagctgg
gccattcccaagggcccctcgctcgaccccaaggtccgccgcctggccgtgcatgtcgag
gatcacccgctggactacgccgatttcgaaggcaatatccccgaaggccactacggcgcc
ggtgacgtgatcgtctgggatcgcggtatctgggagcccgagggcgatccacgcgaggcc
tatgccaagggcaagctgcgcttccgtctgcagggcgaaaagctgtcgggcgtctggaac
ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcccacgat
ggccaggcccgcagcgaaaccgactacagcatcgtcgaagccctgccggacagcgtgctg
agcgaccgcaccctgccgccgcgccggcctgcgaaaacagccactcccaacaaacgcaag
gccaaggccagcctcgtcgccctgccggacaggctccagccgcaactcgccaccctggtc
gattcgccgcccagcggtgactggcactacgaggtcaagttcgacggctaccgcatcctc
gcccgcatcgaaggcgcggatgtgcgcctgttcacccgcaatggccacgactggagtgcg
aagatgccgcgccaggtcgaggccttgaaagcgctggagctcgattcggcgtggctcgac
ggcgagatggtggtggtcgacgaccagggtgtggccgacttccaggccttgcagaacgcc
ttcgacaccgagcacgacgaatgcatcacctactatctgttcgacctgccctacctgggt
ggcgaagacctgcgccagctaccgctgcaggcgcgacgcaccaccctggcccggctgctg
gaaaacacgccctcggacctcctcaagttctccgccgacttcaccgagccagttgactcg
ctgctcgacagcgcctgccgcctcaagctcgaaggcctgatcggcaagcgcgccgacagc
ccctacgtgggccggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggag
ttcgtgatcgtcggctacaccgaccccaaaggcagccgcaacgcgttcggcgccctgttg
ctggctctgcacgacaacgacagcggccagctgcgctatgccggcaaggtcggcaccggg
ttcagcaccaccacgctggacagcctgcatgcccgcctcaagcccctggaagtcgacaag
ccggccttgcccaagccgccccgtggcgccgaggcccgtggcgtgcattggctcaagccg
caattgctggccgaagtcgcctacgcccagatgacccgcgaaggcatcgtccgccactcg
gtgttccacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcgtgccatg
cccgccaagcgcgccgcgcagccccccgccgagcccctcggcagcctgcgcctgacccac
cccgaccgcgtggtcgacgccagcaacggcaccaccaagcgccaggtcgccgagtactac
gcccaggtcgccgactggctgctgccgcagctcaaggaccgccccgtggcgctggtgcgc
gcaccggacggcctgggcggcgaactgttcttccagaagaacgccggccagctgcacatc
ccggcgctgcgcagctacagcaaggcgcaggccggccaggcggcgatggtgctcaaccgc
gccgacagcctgttgggcgcggtgcagatgaacatgctcgagctgcacacctggaatgcc
accgacaaggatttcgacaagcccgaccgcttcgtcctcgacctcgatcccgatccggca
ttgccctggaaagccatgctcgaagccactcagctgaccctcaccctgctcgatgagctg
ggcctgaaggtgttcctcaagaccagcggcggcaagggcatgcacctggtggtgccactg
acccgccgcgccggttgggatgaagtgaaggacttcagccatgccctcgtcgagcatatg
gcgggcctgttcccggagcggctcagcgccgtctccgggccccgcaaccgggtcggacgg
atcttcatcgactacctgcgcaacggcaagggcgccaccacggtcgcggcgtattcgctg
cgtgcccgcgaaggcctgccggtgtcggtgccgatctggcgcgaagagctgacccagctc
aagggcgccaaccagtggcacatcggcaacctgcaggcgcggctggccgaggtggacgac
ccatgggcggacatggccaagacccggcagtccatcaccgtgcgcatgcgcaagcagttg
ggaatcgcctga
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