Pseudomonas maumuensis: KSS90_17615
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Entry
KSS90_17615 CDS
T07719
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmam
Pseudomonas maumuensis
Pathway
pmam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS90_17615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmam03400
]
KSS90_17615 (mfd)
Enzymes [BR:
pmam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS90_17615 (mfd)
DNA repair and recombination proteins [BR:
pmam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS90_17615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXH55152
LinkDB
All DBs
Position
3946420..3949869
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAVAEAASTAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQKIDVEQMRARLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPESQRSIDKVDSIRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDMTRPLLPPAELFLPVEDCFARLKQWPRVVVSAEDLDPGAGRERFPARALPNL
AIEAKAHQPLAELANFLDQFSGRVLFTAESAGRREVLLELLERLKLRPQTVDGWADFITG
GERLAITIAPLDDGLLLDDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQTAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPSKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLTPQNP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggcgcggccttgagcctggccgtcgccgaggctgccagtaccgccggtcgcttc
accttgctgctgaccgccgacagccaggcggccgaccgcctggagcaggaactgcgcttc
ttcgcgccggatctgccggtgctgcctttccccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatctcccagcgtatcgccagcctctaccggctgccggag
ctggaccacggcatcctggtcgtgccgatcaccaccgccctgcaccgccttgcgcccacg
cgcttcctgctgggtagcagcctggtgctggacgtgggccagaagatcgacgtcgagcag
atgcgcgcgcgcctggaggccagcggctatcgctgcgtcgacacggtctacgagcacggc
gagttcgccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagcagccgtac
cgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggagagccag
cgctcgatcgacaaggtcgactcgatccgccttttgccggcgcgcgagttccccatgcag
aaggacgaggtgacgcgcttcaaggcgcgcttccgcgaacgcttcgacgtcgacttccgc
cgcagcgcgatcttccaggaccttaccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaaccgccaccctgttcgactacctgccggccgacacccag
gtgttctcgctgccgggcgtggaacaggccgccgaacacttctggaacgatgtgcgcggg
cgctatgaagagcgccgcggcgacatgacccggccactgctgccgccggcggaactgttc
ctgcccgtggaggattgcttcgcccgcctcaagcaatggccacgggtggtggtcagcgcc
gaagacctcgaccccggcgcaggccgcgagcgcttccccgcccgcgccctgcccaacctg
gccatcgaggccaaggcccaccagccgctggcggaactggccaacttcctcgaccagttc
agcggccgcgtgctgttcaccgcggagtccgcaggccggcgcgaggtactgctggagctg
ctcgaacgcctcaagctgcgcccgcagaccgtcgacggctgggccgacttcatcaccggc
ggcgagcgcctggcgatcaccatcgcccccttggacgacggcctgctgctggacgacccg
gccattgccctggtagcggaaagcccgctgttcggccagcgcgtgatgcagcgcaggcgc
cgcgagaaacgcggcgaggcggccaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtacacatcgaccatggcgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgagttcctcaccctcgaatacgccgagggcgccaag
ctctacgtgccagtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggccccgctgcaccggctgggctccgaagcctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgcgacgtcgccgccgagctgctcgacatctacgcccgccgcgccgcgcgc
aaaggctacgctttcgccgatcccgccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcagaccgccatcgaagccgtgcgtgccgacatgctcgcc
ggccagcccatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtagcc
atgcgcgccgccttcatcgccgtgcatagcggccgccaggtggcggtgctggtgcccacc
accctactcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
aaggtcgaggtgatgagccgcttcaagtcggccaaggaagtcgccagcgccgcggcggag
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgtg
cgcttcaaggacctgggcctggccatcatcgacgaggaacaccgcttcggcgtgcgccag
aaggaacagctcaaggcgctgcgcagcgaggtggacatcctcaccctgaccgccacgccg
attccacgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
cccccggcgcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtg
aaggaagcgctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaagagcatcgagaagtgcgccgccgagctggccgagctggtgcccgaggcgcgcatc
ggcatcggccacgggcagatgcgcgaacgcgagctcgagcaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcgcaattgcaccag
ttgcgcggccgggtcgggcgcagccaccaccaggcctatgcctacctgctgacgccaccg
cgccagcagatcagcgccgacgccgagaagcgcctggaggccatcgccaatacccaggac
ctgggcgcgggcttcgtcctggccaccaacgacctggagatccgcggcgccggcgaactg
ctcggcgaaggccagagtgggcagatccaggcggtcggcttcaccctgtacatggagatg
ctcgaacgcgcggtcaaggccatccgcaagggcacccaacctaacctcgaacagccgctg
ggcggcggcccggagatcaacctgcgcctgccagcgctgatccccgaggactacctgccc
gacgtgcatgcgcgcctgatcctctacaagcgcatcgcctcggcggccgacgaagagggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggagccgagcaag
aacctgatgcgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaagaaagtc
gatgccggccccaacggcggcaagctcgagttcgaggccgagacaccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccgatggaacgccccgaagaacgtttcaacaccctggaggcgctg
ttcgagcgccttaccccacaaaatccataa
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