Pseudomonas mandelii: OU5_5917
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Entry
OU5_5917 CDS
T03626
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OU5_5917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pman03400
]
OU5_5917
Enzymes [BR:
pman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OU5_5917
DNA repair and recombination proteins [BR:
pman03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OU5_5917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHZ72996
UniProt:
A0A024EK67
LinkDB
All DBs
Position
6523907..6526507
Genome browser
AA seq
866 aa
AA seq
DB search
MNKSLDDYDRMRDFSATSEPAAKRSGKKTAKDHALQFCIQKHDASRLHYDFRLELDGALK
SWAVPKGPSLDPKVKRLAVHVEDHPIDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDPA
KAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDSAAKPESDYDVVAAEPDS
VLSDRTIVPKKAKTAAKPKPVKKPARKVAAKQRSAQLTGAHKAKLPDQLKPELATPVEKA
PPGEWSYEIKFDGYRIMARIDHDEVKLFTRNGHDWTHKLPKQAEALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFESNRSGNILYYLFDMPYLNGVDLREVPVEERRVALATVLKPN
KDPLLRFSDAFGEEPEALLNSACQMQMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVV
VGFTDPKGARNAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKHIYEQLKPLQVKKPAV
VNPPTGFDAKGVHWLKPVLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAEDITEERAKAVK
AQTSRKSAADKPATATKKKTAKAAPAPSQVGLGDGKVRITHPDRVIDASSGTTKVQLAEY
YASVAEWILPELKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKDVTGQPVMIIN
NAEALIGAVQMSTVELHTWNATTENLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDE
LGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSYMAKLLPERFSAVSGPKNRVG
RIFIDYLRNGLGATTICAYAARTREGLPVSVPIFREEVAELKGGNQWNIHNVQERLAEVG
DEPWADLKKTRQTITADMRRRVGMKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagagtctggacgattacgaccgcatgcgcgatttttcggcgacctctgagccc
gccgcgaaacgttcaggcaagaaaactgcgaaagaccatgccttgcagttctgtatccag
aagcacgatgcctcgcggttgcactatgactttcgcctggaactcgatggcgcactgaaa
agctgggccgtgccgaaaggcccttcgctggaccccaaggtcaagcgcctggcagtccac
gttgaagaccatccgatcgattacgccacgttcgagggcagcattcccgaagggcattac
ggtgccggcgatgtgattgtctgggaccggggcgtgtggatcccccaggaagatccggcc
aaggcctatgccaaaggcaagctcaagttcgagctgcaaggcgagaaactcggcggcttg
tggaacctggttcgcacgcacatgccgggcaagcaggagcagtggtttctgatcaagcat
caggacagcgcggcgaaacccgagagtgattacgacgtggtcgccgccgaacccgacagc
gtgctcagtgaccgcaccattgtccccaaaaaggccaagaccgccgccaagcccaaaccg
gtgaagaagccggcgcgcaaggtcgcggctaaacagcggtcggcgcaactcaccggggct
cacaaggccaagctgcccgaccagctcaaaccggaattggcgacgccggtggaaaaagcc
ccgccgggcgagtggagctatgagatcaagttcgacggctaccggatcatggcgcgcatc
gaccacgacgaggtgaaactcttcacccgcaacggccacgactggacccacaaattgccg
aaacaggccgaggcgctggccgctctgggcctggagtccgcctggctcgacggtgagatg
gtggtggctaacgagcagggtgtgccggactttcaggcgctgcaaaatgcctttgaatcc
aatcgcagcggcaacatcctttattacctgttcgacatgccttacctcaatggcgtggac
ctgcgcgaggtgccggtcgaggagcggcgggtcgcgctggcaacggtgctcaaacccaat
aaagatcctttgctgcgcttctccgacgcgttcggcgaggagccggaagccttgctcaac
agtgcctgccaaatgcagatggaagggctgatcggcaagcgcctggggtcgccttatgtg
tcacggcgcagcagtgactggatcaagctcaagtgcaaacatcggcaggaattcgtcgtg
gtcgggttcaccgatcccaaaggtgcgcgcaatgccttcggcgcgctgctgttgggattg
catgaccgggacagtggcgagttgcgctacgctggcaaggtcggcaccggtttcaacgag
accacgctcaagcacatttatgaacagctcaaaccgttgcaggtaaaaaaaccggcggtg
gtcaatccgccgaccggtttcgacgccaagggtgtgcattggctcaaaccggtgttgctc
gccgaagtcgcgttcgccgagatgaccaaggacggatcggtgcgccatgccgtattccat
ggcttgcgcgatgacaagcccgccgaagacatcaccgaggagcgtgcgaaagccgtgaaa
gcccagaccagcaggaaatccgccgctgacaaaccggccaccgcgacgaaaaagaaaacg
gccaaggcagcgcccgcgccctcacaagtcggcctcggcgacggcaaagtgcgcatcacc
cacccggaccgggtgatcgatgcgagcagcggcaccaccaaagtgcagctggcggagtat
tacgccagcgtcgccgaatggattctgcccgagctcaaggatcggccggtggcgctggtg
cgcgccccggacgggatcgccggcgagctgttcttccagaaaaacgccgagcgcctggcc
attccgggcatcaccacgctggacaaggacgtcaccggccaaccggtgatgatcatcaac
aacgccgaagcgctgattggcgccgtgcagatgagcacggtggaactgcacacctggaac
gctaccacggagaatctcgacaaacctgaccgcttcgttctcgacctcgatccggacccg
gcgctgccgtggaaaagcatggtcgaggcgactcagctgacgctgtcggtgctggatgaa
ctggggctcaaggccttcctcaagaccagcggcggcaaggggattcacctggtggtgccg
ctgacccgaaagcacggttgggacgaggtgaaggacttcagccacgcaattgtcagctac
atggcgaagttgctgccggagcgcttttcggcggtgtcagggccgaagaatcgcgtcggg
cggatcttcatcgattacctgcgcaatggactgggtgccactaccatctgcgcctatgcc
gcccgcacccgcgaagggttgccggtgtcagtgccgatttttcgggaagaggtggcagag
ctcaagggcggtaatcagtggaatatccacaacgtgcaggaacgactggctgaagtgggt
gatgaaccttgggcggacttgaagaaaacccggcaaaccatcaccgccgacatgcgtcgg
cgggtcggaatgaaaaaatag
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