Paracoccus marcusii: CP157_03253
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Entry
CP157_03253 CDS
T07681
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmau
Paracoccus marcusii
Pathway
pmau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP157_03253 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmau03400
]
CP157_03253 (ligD)
Enzymes [BR:
pmau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP157_03253 (ligD)
DNA repair and recombination proteins [BR:
pmau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP157_03253 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXI65464
LinkDB
All DBs
Position
pCP157_01:155220..157598
Genome browser
AA seq
792 aa
AA seq
DB search
MADLGAYLDKRDFGATPEPQADGSPSALGLRYSMQNHDATRLHWDLRLEWDGVLLSWAVT
RGPSLDPADKRLAVRTEDHPLSYLTFEGTIPKGHYGAGTVMLWDLGWWQPLEPAARGLAK
GHLKFRLHGRRMTGDWNLIRMARRDKRDNWLLVKIDDEAAGQRDPVARYRTSVASGRSFA
AIRADKAACLPDHSGTRPGHRPVQLATLTDDLADHATHWHELKLDGYRAQVALGVGGPRV
FTRAGHDWTDRFANLIPALRDIPCASALIDGEIVAGAGLQGFGTLQDAIAAGGPFGYVAF
DLLQLDGRDLTDLPLTERRAALEGLLRPLPPMGAVALSPVIHGPADEALALICGNGGEGV
IAKRTDAPYRGGRSRDWLKIKCRRQGTFRIVGWQASTSRGRPFASLALACDRDGDGGLAY
MGKVGTGFDQDTMADLARRMEPLVRRDAPVKAPRREVAGMTWIDPDLTARIDYAETTAQG
RLRHAVYLGLHDEGPPMRTPAPTVAISSGDRVIFDKPRLTKAGLADYYRAAAPLMLPELA
GRPLSLLRLPDGMAGERFFQKHPGKGFPAALKIQQIADKDGAPSPYAYVTDVDGILGAVQ
MGTVEFHIWGARRDRLDRPDRMVFDLDPDEGLGFAATRRAALELRDRLSRLGLRSWAMLS
GGKGVHVIVPLRRTAGWDTVKLFSRGVAMLTAQAHPDRFTAEMSKAKRKGRIFVDWLRNE
RGATAIAPFSVRARPGAPVACPVSWDELGRIRKAGAFSTAQALERGWADTDPPPAQTLSA
AVIAALEAALTA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggccgatctgggcgcctatctggacaagcgcgatttcggagcgacgcccgaaccgcag
gcggacggcagcccttcggcgcttgggctgcgctattcgatgcagaaccacgacgccacg
cggctgcactgggacctgcgactggaatgggacggggtgctgctgtcctgggcggtgacg
cgggggccgtcgctggaccccgccgacaagcggctggccgtgcggaccgaggatcacccc
ctgtcctatctgaccttcgagggtacgatcccgaagggccattacggcgcgggcaccgtg
atgctgtgggatctgggctggtggcaaccgctggaacccgcggcgcgcgggctggccaag
gggcacctgaagttcaggctgcacggtcggcggatgaccggcgactggaacctgatccgc
atggcgcgccgggacaagcgcgacaactggctgctggtcaagatcgacgacgaggccgcg
ggccagcgcgacccggtggcgcgctatcgcaccagcgtggcgtcggggcgcagctttgcg
gcgatccgcgcggacaaggccgcctgcctgcccgaccattccggcacccgtcccggccac
cggcccgtgcagcttgcgacgctgacggacgatctggccgatcacgccacgcattggcac
gagctgaagctggacggctatcgcgcgcaggtggcgcttggcgtaggcggcccgcgcgtc
ttcacgcgggcgggccatgactggaccgaccgtttcgccaacctgatccccgccctgcgc
gacatcccctgcgcctcggccctgatcgacggagagatcgtggccggcgccgggctgcag
gggttcggcacgctgcaggacgcgatcgcggcgggcgggccgtttggatacgtggccttc
gatctgctgcagctggacgggcgcgacctgacggacctgcccctgaccgaacgccgcgcc
gcgctggagggcctgctgcgccccctgccgccgatgggcgcggtggcgctgtcgcccgtc
atccacggcccggcggacgaggcgctggcgctgatctgcggcaatggcggcgagggggtg
atcgccaagcggaccgatgccccctatcgcggcgggcgcagccgcgactggctgaagatc
aagtgccgcaggcagggcaccttccgcatcgtcggctggcaggccagcaccagccgcggc
aggcccttcgcctcgttggcgctggcctgcgaccgggacggggacgggggactggcctat
atgggcaaggtcggaaccgggttcgaccaggacacgatggccgaccttgcccggcgcatg
gaaccgctggtgcgcagggacgcccccgtcaaggccccccgccgggaggttgcgggcatg
acctggatcgacccggacctgaccgcccggatcgattacgccgaaaccaccgcccagggt
cgcctgcgccatgcggtgtatctgggcctgcacgatgagggtccgccgatgcgaacgccc
gccccgaccgtcgcgatcagcagcggcgaccgcgtgatctttgacaagccgcgcctgacc
aaggcggggctggccgattattatcgcgcggccgcaccgctgatgctgcccgaactggcc
gggcggcccctgtccctgctgcgcctgcccgacggcatggccggcgagcggttctttcag
aagcaccccggcaagggctttcccgccgcgctgaagatccagcagatcgccgacaaggac
ggcgcgcccagcccctatgcctatgtcaccgacgtcgacggcatcctgggcgcggtgcag
atgggcactgtcgaattccacatctggggcgcccgtcgcgaccggctggaccggcccgac
cgcatggtctttgacctggaccccgacgagggcctgggctttgccgcgacccgccgcgcc
gcgctggagttgcgcgaccggctgtcgaggcttggcctgcggtcttgggcgatgctgtcg
gggggcaagggcgtccatgtgatcgtgccgctgcgccgcaccgcgggctgggacacggtc
aagctgttcagccgcggtgtggcgatgctgacggcacaggcccatcccgaccgcttcacc
gccgagatgtccaaggcaaagcgcaagggccgcatcttcgtcgactggctgaggaacgaa
cgcggcgcgacggccatcgcgcccttctccgtgcgcgcccgccccggcgcgccggtggcc
tgcccggtcagctgggacgaactggggcgcatccgcaaggctggggcgttctcgaccgcg
caggcgctggagcggggctgggccgacaccgacccgccgcccgcccagaccctgtcggcg
gccgtgatagcggcgctggaagcggcgctgacggcctga
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