Planctobacterium marinum: MACH26_22140
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Entry
MACH26_22140 CDS
T09721
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MACH26_22140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_22140 (mfd)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH26_22140 (mfd)
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MACH26_22140 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDX06693
UniProt:
A0AA48KQP0
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All DBs
Position
2495198..2498677
Genome browser
AA seq
1159 aa
AA seq
DB search
MQNTIFSPQLPAKAGEQRYWCNLSGSSPALAIANTALQTDNRIIAVTADSPAALKLEREI
KHFIKHSDVKVSVFPDWETLAYDSFSPHQDIISQRLETLYELTQPGKDIYILPVTTLLQK
IAPVEYLGKYVLFLKQGQTLDIEAFRNRLNRAGYSAVNQVMEHGEYSVRGSIIDLYPMGT
TQPLRLDLFDDEIESIRAFDPDTQRSGEKQNDIRLLPAHEFPINKQGIEQFKENYKSRFD
AAIGKGSIFHDVSSGVMPAGIEYYLPLFFEQTASIFDYISQETLFVTQGDINQAMDFFLA
DVSERYEQHRWDPLKPLLPPEDLFLRVEELNQAIKQWPRVNLCHDVPDNKSGVVQYQIDK
TPDIAINAQLKTPFVKLKAQIKTWQDNGTKILFCAETAGRKEALLELLAEAEIKPVSYNH
TDAFLSAHESVGICIGYVDNSFVIEGSDGSLAFVTETELLGHKVSQRRLRKKHTATDESA
VIRNLVELQPGQPVVHIEHGVGRYLGLQTLDAGGVTTEYLTIEYAKQSKLYVPVASLHLI
SRYSGGNEQAPLHNLGTDTWSKARQKAAEKVRDVAAQLLEVYAQREAKPGQACKIDWQEY
RHFADSFPFEETDDQQQAINAVINDMGSAKAMDRLVCGDVGFGKTEVAMRAAFIAASQGK
QVAVLVPTTLLAQQHYENFRDRMSQWPFQIEVMSRFNTSKEQKQVLAGIAEGKVDIVIGT
HKLIQKDVKFADLGLLIIDEEHRFGVQQKEKIKSLRAEVDILTLTATPIPRTLNMALSGM
RDLSIIATPPAKRLAIKTFVKQRDKALIREAVMREILRGGQVYFLHNEVESIEKTASEIS
EIVPEAKVAVAHGQMREKELERVMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRADH
LGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDATKRLEAIAQSDNLGAGFELATHDL
EIRGAGELLGEEQSGQITTVGFSLYMEMLEEAVEALKAGKQPSLDNLMAQHTEVELRLPT
LLPEDYIADVNIRLSMYKKIASCKDKAALKDIQVELIDRFGMLPQATKNLFKVHELKLKA
KNIGIQKIDANAQGGFVEFGEQTNVDPGFIIQLIQSKPDVYRFDGPQKLKFVKVTTDAIQ
RLAFIEGLVNDFNRQQKVA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatacaattttttctccccagctgccagccaaagctggcgaacagcgttactgg
tgtaatctatctggcagctcccctgccctggctattgccaataccgcgctacaaactgat
aaccgaattattgccgttaccgctgactctccggcagcgttaaagcttgagcgagagatt
aagcactttattaaacacagtgatgttaaagtgagtgtcttccccgattgggaaacgctg
gcttatgactcattttccccgcatcaggacatcatctctcagcgccttgaaaccctatat
gagttaacccaaccgggtaaagatatttacatattgccggtaacgaccctgctgcaaaaa
attgcaccagtggaataccttgggaaatatgttctgttcctgaagcagggtcaaacactg
gatattgaagcattccgcaatcgtcttaaccgagcgggttatagtgcggtaaatcaagtc
atggaacacggcgaatattcggttcgaggcagcataattgacttataccctatgggtacc
acacagcctttgcgactggatctgtttgatgatgaaattgaaagtattcgcgcatttgat
cccgatacccagcgttcaggtgaaaagcaaaacgacatacgcctgttgcctgctcatgaa
tttcccatcaacaagcaaggcattgagcaatttaaagaaaattataaaagccggtttgat
gcagcaataggcaaaggctctatctttcacgatgtcagttcaggtgtcatgcctgcgggt
attgaatattatctgccccttttctttgaacagactgccagtatctttgactatatcagt
caggagaccttgtttgtaacgcaaggtgatatcaatcaggcgatggactttttccttgct
gatgtgagtgaaagatatgagcagcatcgatgggatccactgaaacccttattgccaccc
gaagatttatttcttcgcgtagaagaactaaaccaagccattaaacaatggccaagggtc
aatctctgtcatgacgttccagacaataaaagtggtgtggtgcagtaccagatagataaa
acccctgacatcgccataaacgcacaactgaaaaccccttttgttaaattaaaagcccaa
ataaaaacctggcaagacaatggcacaaagatattgttttgtgctgaaaccgccggtcgc
aaagaagccttactggagttattagctgaagcggaaattaaacctgtttcctataaccac
accgatgcttttttaagtgctcatgagtctgtcggtatctgcataggttatgttgataac
agttttgttatagaaggttcagatggctcactggcgtttgtcaccgaaaccgaattactt
ggccataaagtcagccagcgacgattgcgtaaaaaacacacggcaacagacgaatcagct
gttatccgcaacctggttgagctgcagccaggtcagcctgtggtgcatatcgaacacggt
gtgggtcggtatttgggcttgcaaaccttagatgccggtggcgtaactacagaatatctc
acgattgaatatgcaaaacagtctaagctctatgtcccggttgcttcactacacctgatt
agccgatacagcggtggtaacgagcaggcaccattacataatttgggcacagatacatgg
agtaaagcgcgtcaaaaagcggccgaaaaagtccgtgatgtagccgctcaattattagag
gtttatgcacaacgagaagctaaacccggtcaagcctgcaaaatagactggcaggagtac
cgtcattttgccgacagtttccccttcgaagaaaccgatgatcagcagcaagctattaat
gccgtcatcaacgatatgggctcagccaaagctatggaccgactggtttgcggcgatgtg
ggttttggtaaaaccgaagttgccatgcgagcggcctttattgcggcaagccagggaaaa
caagtagcagtattagttccaacaacactgctggcacaacagcattacgaaaacttcagg
gatagaatgagtcaatggccttttcagatagaagtcatgtcgcgttttaataccagtaaa
gagcaaaaacaagtattggcgggcattgctgaaggcaaggtagatatcgtaattggtacc
cataagctgatacaaaaagatgttaaatttgcagacctgggcctattgattatcgatgaa
gaacaccgtttcggggtacagcaaaaagaaaaaattaaaagcctacgggccgaagtagat
attttaacccttaccgcgacaccaatccccagaaccctcaacatggccctaagcggcatg
cgagacttgtcaattattgcgacacctccagcaaaacggcttgcgattaaaaccttcgtt
aaacagcgggataaagcgttaatccgtgaagccgtgatgcgcgagattctgcgcggtgga
caggtctattttctgcataacgaggtagaaagtatcgaaaagaccgccagtgaaatttcc
gaaatagtgccagaagctaaagttgctgtagctcatggtcaaatgcgtgaaaaagagttg
gaacgggtcatgtccgatttctatcaccagcgctttaatgtgttggtctgtaccaccatt
atcgagacaggtatcgatatcccgtcagcaaataccattatcatggaccgggctgatcat
ttaggcctggcacagctacatcaattacgcggacgtgtcggtcgttctcatcaccaggcg
tatgcttacttgcttacaccgcatccaaaacgcatgaccaaagatgccactaaacgcctt
gaggctattgcccaatcagacaatctcggtgcaggttttgagttagccacccatgattta
gaaatccgtggcgcaggggaactattgggtgaagagcaatcagggcaaatcaccacagtg
ggattcagtttgtatatggagatgctggaagaagccgtagaagcattgaaagccggtaaa
cagccgtcactggacaacctcatggcgcaacacacagaagttgaattgcgattaccgact
ctgcttccggaagactacatagccgacgttaacattcgcctgtctatgtacaaaaaaatc
gcatcatgcaaagacaaagcggctttaaaggacattcaagtggaattaattgatcgtttt
ggcatgttacctcaagcgactaaaaacttatttaaagttcacgagcttaaattgaaagca
aagaatatcggtattcaaaagatcgatgccaacgcccaaggtggatttgtagagtttggt
gagcaaactaatgttgatccaggttttatcattcagttaatacaatccaaacccgatgta
tatcgctttgatgggccccaaaaacttaaattcgtgaaagttacgacggatgcgattcag
cggttggcgtttattgagggactggttaatgattttaatcggcaacaaaaagttgcttaa
DBGET
integrated database retrieval system
