Pecten maximus (king scallop): 117325649
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Entry
117325649 CDS
T07399
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117325649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmax03400
]
117325649
Enzymes [BR:
pmax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117325649
DNA repair and recombination proteins [BR:
pmax03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117325649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
117325649
NCBI-ProteinID:
XP_033737928
LinkDB
All DBs
Position
4:26556284..26577587
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AA seq
916 aa
AA seq
DB search
MADVNDDDKPSVTVASKVSFAELCGLLEKISKTQGNDKKKRILTDFVDKWRDYHNSLHEN
DKDTTDSFYPAMRLLLPHHEKERVAYGIKEHMLAKLLIEVLCLGKDSADANRLLNYKAPK
TARADAGDFAGVTYFVLKNRCPERGTLTIQEVNDCLDGIAQNNAAKKKDLVRKNVLRLLT
NMSAVELKWLIRMIVKELKVGLSQASVLSVYHPDAEDFFNVNNNLEKVCRMLRERSVRVH
EIGISIFSPFSPMLGERASPDEVEKLMEGKTYFIETKFDGERMLLHKRDDEYKYFSRSAN
EYTATFGSNSFEGNFTQYIHDLFKPGIKSCILDGEMLGYHAETKTYATKAMNTDIKRQQQ
EGYQPCYNIFDIVVLNDKVLTNKPIRERLQLLETVIEPEEGRVQISQHTEANTNQECADA
LNKAIDGREEGIMVKNPDSVYRPNTRKGGWIKIKPEYVGGLMDELDVLVVGGFLGVGHRG
GMMSHFLCAVAVPMEDGEKPEVFHSFCKVGSGYSKKVLGEFNEKLKDHWKVFDKRNPPTS
VILASGFKEKPDAWIEPRDSCIVQIKAAEIIDSDRFKTGCTLRFPRVECFREDKAWHECM
TVADILELKEKSGGKLAGGKVELNDGEEPVKKKRKIVSRAVRPTLGAQFKGADIASITQV
SKMLEGKEFCVVNGPSSFPKHAIETKIVEFGGRIVQNPGPTTFCVLADKVAVRVTNLIRR
DMYDVVKVNWFQRCVHASRWIPWSPADMIHISPKTQLDFQKQYDEFGDSFVDPTSPEQLE
TVFGRITKVENDMSDPLDIAEIEEAYFPDDSPYGLFRTCRFYMDDSLVINDKTTKLKNST
LDFLALELRFFGGTIVDEIDLEVSHVMLDKSDLSRLEEIKGMRRQRKKKFHIVTKDWIRQ
SMEEGTLVSERSFEPS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttaacgatgacgacaaaccatccgtaactgtcgcatccaaggtctcattt
gcggaactgtgtggactacttgagaaaatatccaaaacgcaaggaaatgataaaaagaag
cggattttgacagattttgttgacaaatggagagactatcataactcactacacgaaaat
gataaagacacgactgactcattctatcctgccatgcggttattgcttcctcaccatgag
aaggaaagagtagcatacggaatcaaagagcacatgttagccaaactgctgattgaggtg
ttgtgtctaggaaaggacagtgctgatgccaacagactgcttaactacaaagctccgaaa
actgcaagagctgatgctggagattttgccggtgtgacctactttgtgttgaagaaccgc
tgtccagagaggggtacattaaccattcaggaggtaaatgactgtctggatggtatcgcc
cagaacaatgctgccaagaaaaaggacttggtgaggaagaacgtgctaagactcttgaca
aacatgtcagctgttgagctcaaatggctcatcaggatgattgtcaaggaactgaaggtg
gggctgagtcaggcgtcggtcttgtctgtttatcatccagatgctgaggacttcttcaat
gtcaacaacaacctggaaaaggtgtgtcggatgctgagagagaggagtgttcgggtacat
gagattggtatcagtatattctcacccttttctccgatgttgggggaaagagcttcacct
gatgaggtggagaaactgatggagggtaagacctacttcatagagaccaagtttgatgga
gagcgcatgttgttacacaaacgggatgatgaatataaatacttttccaggagtgcaaat
gagtatacagccacatttgggtccaacagttttgaagggaatttcacacaatacattcat
gacttattcaaacctggaatcaagtcatgtatattggatggagaaatgttaggataccat
gcagaaactaaaacctatgctacaaaggccatgaacacagacatcaaacgacaacaacaa
gaagggtatcagccatgctacaacatatttgacattgttgtactcaacgataaagtcctc
accaacaaacctattagggagaggctacagctgctggagacagtgattgaacccgaggag
gggcgtgtacagatcagtcagcacacagaggccaacacaaaccaggagtgtgcagatgcc
ttgaacaaagctattgatggcagagaggagggtatcatggtaaagaacccagactcggtt
tatagacccaataccagaaaggggggctggatcaaaataaagccagagtatgttggggga
ttgatggacgagcttgatgtcctggtggtgggtggcttcctgggtgttggccaccgtggg
ggaatgatgtcacacttcctgtgtgctgtggcagtgcctatggaggacggagagaaacct
gaagtatttcattccttctgtaaggttggatcaggatattctaaaaaggtacttggagaa
tttaatgagaagttgaaggatcattggaaggtctttgacaagagaaaccctccaacctct
gtcatactggcctctggcttcaaggagaaaccagacgcttggatagagccacgtgactcc
tgtattgtccagataaaagcagcagaaatcattgacagcgaccggtttaagacaggttgt
accctgaggtttccccgtgtcgagtgtttccgtgaggacaaggcttggcatgaatgcatg
actgtggcagatattttggaactgaaggagaagtctggaggtaaattggcgggtggtaag
gtggaacttaatgatggagaggaaccagtgaagaaaaaaaggaagattgttagtcgagca
gtacgtccaaccctcggtgctcagttcaagggagctgacatcgcgtcaattacacaggta
tcaaagatgctggaaggaaaggagttttgtgtagttaatggtccatcatcttttccaaag
catgccatagagactaaaattgtagaatttggtggcaggatagtacaaaatccaggtcca
accaccttctgtgttctggcagacaaggtagctgtccgtgtcaccaacctcatccgacgt
gatatgtatgatgttgtcaaggtgaactggttccagcgctgtgtgcatgccagtcgatgg
ataccatggtccccagctgatatgatccacatctcgccaaagacccagctggatttccag
aagcaatacgatgagtttggggacagcttcgttgatcctaccagtccagagcaactagag
actgtgtttggtagaataactaaggttgaaaatgacatgagtgatcctctggatatagcg
gagatagaggaggcttactttcctgacgattctccgtacggattattccgtacttgcaga
ttttacatggatgacagtttagtcattaatgacaagaccacgaaactaaagaactctacg
ctggacttcctagccctggagttacggttctttggtgggaccattgttgatgagatagac
cttgaggtttctcatgtcatgttggataaaagtgacctaagtcggctggaggaaataaag
ggaatgagaagacaaaggaaaaagaagtttcacattgtcaccaaagactggatccggcag
agtatggaggaaggaaccctggtatcagaacgcagctttgaaccatcctag
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