KEGG   Pecten maximus (king scallop): 117333691
Entry
117333691         CDS       T07399                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pmax  Pecten maximus (king scallop)
Pathway
pmax03030  DNA replication
pmax03410  Base excision repair
pmax03420  Nucleotide excision repair
pmax03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117333691
   03410 Base excision repair
    117333691
   03420 Nucleotide excision repair
    117333691
   03430 Mismatch repair
    117333691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmax03032]
    117333691
   03400 DNA repair and recombination proteins [BR:pmax03400]
    117333691
Enzymes [BR:pmax01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117333691
    6.5.1.6  DNA ligase (ATP or NAD+)
     117333691
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117333691
DNA replication proteins [BR:pmax03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117333691
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117333691
DNA repair and recombination proteins [BR:pmax03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117333691
   NER (nucleotide excision repair)
    Other NER factors
     117333691
   MMR (mismatch excision repair)
    Other MMR factors
     117333691
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 117333691
NCBI-ProteinID: XP_033749004
LinkDB
Position
1:40443089..40494417
AA seq 916 aa
MGSKRKTLNYSDEDKTPSKKSKKGKEDEAEATDKSQVGEKEADVTDKSSEKSTGVKSPAS
TKKKEKSKAKTDSKDIEMEDENKDKELDKKEKEDSDDIEMKSDEESSEKETSKTRKGSDK
TSPKTGKGSNKSKKQSSKEKKEKTPKVKKESKKKSPKQVKKESSQSASDTEIDKAEEEKP
KEEKTISVKTEPKAPVHSFFAPKKTTIKTEDVTKDVKTDQNKEKSKEEGSKKEEKEQPVK
KEQTTKINPFASKKEDNATYAPSKSRYHPIDDACWKHKEKVPYLALAKTFEAIEEISARL
KIIDILCNFFRSVIALSPDDLLFCVYLCLNKLAPAYEGMELGIGETVLMKAIAQTTGRSM
DKIKADAQEKGDLGIVAESSRSNQRTMFAPPKLTIRAVFTKLKEIAVMSGNNVMSKKIDI
IKGLFVACRQSEARYLIRSLGGKLRIGLAEQSVLTALGNAVFLTPPGQDFPPEILDGGKG
LSAENLKKKMEESALTIKSVYCECPNYGSIISTLLKDGIEDLPKHCKLTPGVPLKPMLAH
PTKGVSEVLKRFENAEFTCEYKYDGERAQIHILENGTVNIYSRNSENNTSKYPDIIARIP
NVMKESVKSCVIDSEAVAWDAEKKQIQPFQVLSHRKRKDADASEIKIQVCVYAFDLLYLN
GESLVKQPFKRRRELLHKSFTEVEGEFVFAKSMISSDTEEIAVFLDESVKGNCEGLMVKT
LDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGYLGSGKRTGKYGGFLLACYEPD
SEEFQSICKIGTGFKDDDLEQHATFFKENVIDKPKQYYCWDSSHEPDHWFEPVQVWEVKC
ADLSISPTHRAASGIVDPEKGISLRFPRFLRIRDDKKPEDATSATQVADMYKNQDQIQNQ
QTTSEPSKEGDEEEFY
NT seq 2751 nt   +upstreamnt  +downstreamnt
atgggtagcaagaggaaaactttgaactacagtgatgaggataaaactccatctaagaag
agtaaaaagggcaaagaagacgaggctgaagcaactgataaatcgcaagtcggagagaaa
gaggctgatgtaactgataaatcatcagaaaaatcgactggagtaaagtcaccagcttct
acaaaaaagaaagaaaagtctaaagcaaagacagattctaaagatattgaaatggaagat
gaaaacaaggataaagaattagataaaaaggaaaaggaagattcagatgatatagagatg
aagtccgatgaagaatccagtgaaaaggagaccagcaaaacaagaaaaggtagtgataaa
acttcccctaaaactggaaagggttccaacaaaagcaagaaacagtcatccaaggagaaa
aaggagaaaacacctaaagttaaaaaagaaagtaagaaaaaaagtcctaaacaggtgaaa
aaagaatcaagtcaatctgcatcagacacagaaattgacaaagcagaagaagaaaagcca
aaagaagagaagactatttcagtaaagactgaacccaaagctcctgttcacagcttcttt
gctccaaagaaaaccacaatcaagaccgaagatgtgacaaaagatgttaagactgaccag
aataaagaaaaatcaaaggaagaaggcagtaagaaggaagaaaaagaacaaccagtcaag
aaagaacaaacaactaaaataaacccatttgccagtaagaaggaggacaatgctacgtac
gctccgagtaaatctcgttaccacccgatagacgatgcttgttggaaacataaagaaaaa
gtaccttatcttgctctggccaagacctttgaagctattgaggagatatctgcaaggttg
aagatcattgatatcctgtgtaactttttccgctctgtgatagcccttagtcctgatgac
cttctattttgtgtgtatctctgcctaaataaactggcccctgcctacgagggcatggag
ctaggcattggcgagactgtcctcatgaaggccattgctcagaccacagggagaagtatg
gacaaaataaaggccgatgctcaggagaagggtgaccttggcattgtggcagagtctagt
cggagtaaccagaggaccatgtttgctcctcccaagctaaccattcgggctgtgtttact
aaactgaaggaaatagcagtcatgtctggcaacaatgtgatgtccaagaagatagacatc
atcaaaggtttgtttgtggcgtgtcgacagtcagaggcacgttacctcatccggtctcta
ggaggcaagctcaggattggtctggctgaacaaagtgttctcacagctctaggcaatgct
gtttttctcacaccacctggtcaagatttccctccagaaatacttgatggcggtaaaggt
ctttcagcggagaatttaaaaaagaagatggaagaatctgcccttactataaaatctgta
tactgtgagtgccctaactatggctctatcatatctacattactgaaggatgggatagag
gatctaccaaaacactgcaaactcacaccaggtgttcctctgaaaccaatgttggcacat
ccaaccaaaggtgtcagtgaggtgttaaagagatttgagaatgcagaatttacctgtgaa
tataaatacgacggagaacgtgcacagatacatatactagagaatggtacagtgaatatc
tacagtagaaactctgagaataacacaagtaaatacccagacatcatagccaggatcccc
aacgtgatgaaggagtccgtgaagtcctgtgttatagactcggaggcagtggcctgggac
gctgagaagaaacagatacagcctttccaggttctcagtcacaggaaacgaaaggatgca
gatgcttcagaaataaagatacaagtgtgtgtgtatgcttttgacctgctttacctcaat
ggtgaatcacttgtgaagcagcccttcaagcgacggcgagaactgttgcacaagtcattc
acagaagtggagggggagtttgtgttcgctaagtctatgatttcttcagatacagaggaa
atagctgtcttcctggatgaatctgttaaaggaaactgtgaaggacttatggtgaagacc
ttagatgtagatgctacatatgaaatagcaaagagatcccacaattggttgaagctaaag
aaagactacttggaaggtgttggggacactctggaccttgtagtcattggaggttactta
gggtctggtaagcgaacaggaaagtatggagggttcttgttggcctgttatgaaccagac
agtgaagagtttcaatctatatgcaagattggaacaggattcaaagatgatgatctggag
caacatgccacattcttcaaggagaatgtaatagacaagccaaaacagtactactgttgg
gatagctcccatgaacctgatcactggtttgagcctgtccaggtatgggaggttaaatgt
gctgacctctccatatcgcctactcacagggcagcgtctggaatcgttgatccagagaaa
ggcatatctctgcggttcccacgattcctgagaatccgagatgacaagaaaccagaagat
gctacatcagccacccaggtggcagacatgtataagaaccaggaccagattcagaaccaa
cagactacctcagaacctagtaaagagggggatgaggaagagttctattga

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