Pecten maximus (king scallop): 117335004
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Entry
117335004 CDS
T07399
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03013
Nucleocytoplasmic transport
pmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117335004
03015 mRNA surveillance pathway
117335004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117335004
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117335004
5.6.2.5 RNA 5'-3' helicase
117335004
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117335004
mRNA cycle factors
Common to processing body (P body) and stress granule
117335004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
AAA_16
nSTAND3
ATPase
AAA_22
SRP54
PhoH
Motif
Other DBs
NCBI-GeneID:
117335004
NCBI-ProteinID:
XP_033750784
LinkDB
All DBs
Position
9:complement(22643964..22662050)
Genome browser
AA seq
1112 aa
AA seq
DB search
MMSVDAYAPNSQTLTFLDTEEDLLGADTQGTDFDFTDFTLPSQTQSQTQASQLEPGQSQS
QQPNGVDIPLQNGLDKGIGVIAQGVGELNFEEEEEEQFYMKDLPKHACSYCGIHDPACVV
LCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLG
FIPAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLAWLVKVPSDQEQMRGR
QISAQQINKLEELWKDNPDATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEAD
YDKKLKESQTQDNIVVRWDVGLNKKRITYFHLPKANEEMKLMHGDELRIRYMGELHKPWS
GVGHVIKIPDNHSDEVAIELKSNAGVPTECTHNFVVDFVWKSTSFDRMQAALKTFAVDET
SVWGYIYHKLLGHEVEDVVIKCQLPKRFSALNLPELNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATVVYHLAKQNSGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESP
VSFLSLHNQIRNIESVPELQKLQQLKDETGELSSADEKRYRSLKKQCEKELLQHADVICC
TCVGAGDPRLGKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPADRTRKNL
DIPWPQADKPMFFYTTSGQEEISSSGTSYLNRTEAVNVEKIATRFLRSSIKPEQIGIITP
YEGQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSK
PRKLVNSANPGGRFMSNIMFDAREVLIPGSVYDRTQGYREPAVVRHHDQLSYIGPERAYT
GPALNLPVPVNMFIPPMPQPFNTQQPVHMNNKNNPRQNQRGYNYRQKPPRYSNTQTTQGS
QMSQNGSQSQASQDGISQPFSQGPLTQGPMSMSQSFQMSQPGLSGLSQPELSQDSFLADD
FKSQADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgttgacgcttatgccccaaattcccaaacactcacgttcctggacaccgag
gaagatctcctcggagcggatactcaaggcacagacttcgactttacagattttacatta
ccatcacaaacacagtcgcagacccaagcctctcagctagaacctggacagagccaaagt
cagcaacccaatggtgttgatataccactacaaaatggattggataaggggattggagtc
atcgcacaaggggtgggtgagctcaacttcgaggaggaggaagaggaacagttttatatg
aaagatcttcccaaacatgcatgctcatactgtggaatacatgacccagcatgtgtggtg
ctgtgtaactccaccaagaagtggttctgtaatggccgtggtaacacatcaggcagccac
atcatcaaccatttggtgagagctaaggctaaggaggtgacgctccacaaggatggacca
ctgggggagactgtcctcgagtgctacaactgtggctgtcgtaatgtgttcctgcttggc
ttcatcccagccaaggccgactctgtggtggtgttactgtgtagacagccatgtgctaca
ctcaccaacctcaaggacatgaactgggatcccagccagtggcagcccctgatccaggat
cgacagttcctagcctggctggtaaaggtgccctcagaccaggaacaaatgcgaggacgg
cagatctctgcccaacagattaacaaactggaggagttatggaaggacaaccctgatgct
acacttgaagacttggagaaacctggggtagatgaagagccccaacaggtccttctgaga
tatgatgatgcctaccaataccagaacatatttggtcccctggtgaagttagaggcagac
tatgataagaagctgaaggagtcccagacccaggataacattgtggttcgctgggatgtt
ggcctgaacaagaagcgtatcacatacttccacctccccaaggccaacgaagaaatgaag
ctgatgcacggagatgagttacggatccgttacatgggagaacttcacaagccttggtct
ggtgttggacatgtcatcaagatcccagataaccatagtgacgaggtggccatagaactg
aagagtaacgctggtgtgcccacagagtgtacccataactttgtagtggactttgtctgg
aagtcaacatcgtttgacagaatgcaggcagctctgaagacttttgctgttgatgagacc
tcagtttggggctacatttaccacaaactgctcggacatgaagtggaggatgtcgtcatc
aaatgtcagcttcccaagagattcagcgcccttaacctgccagaactgaaccactctcag
gtgtacgcagtgaagactgtcctgcagcgacccctcagtcttatccagggtcctccaggg
acaggtaaaactgtaacctctgcgactgtggtgtaccatctggccaaacagaactctggc
caggtgctggtgtgtgccccctccaacattgctgtggaccagcttaccgagaagattcac
aggactgggctcaaggtggtgcgcctctgtgccaagagccgtgaagccattgagtcccca
gtctctttcctgtccctacacaaccagatcaggaacatcgagagtgtgccagagctacag
aagctgcaacagcttaaagatgagactggtgaactgtcatctgctgatgagaagaggtat
cgctccctcaagaaacagtgtgagaaagagctgctacagcatgcagatgtgatctgctgt
acctgtgttggagcaggggacccaagacttggaaagatgcagttccgctctgtactcatt
gatgagagtacccaggctacagaacccgagtgtatgatccctgtgattctaggatgcaga
caattgattctggttggagatcactgtcagcttggtccagtggtgatgtgtaagaaagca
gctcgtgctggactgtctcagtccctgtttgagcgtttggttgtgctaggtattcgcccc
atcaggctccaggtccagtacagaatgcaccctgcactcagcgccttcccttcaaacatc
ttttatgaaggctctctgcagaatggggttgccccagctgatcgtacaaggaagaatctg
gacattccttggcctcaggcagacaagccgatgttcttctacacgacatctggtcaggag
gaaatctcaagctctggcacctcctatctcaacaggactgaggcagtcaatgtagagaag
attgccacccgtttcctacgatcaagcatcaaacctgaacagatcggtatcatcacacct
tatgagggacaacgagcatacattgtccagtacatgcagtacagcggatctcttaacaag
aagctgtaccaggagattgaagtagccagtgtggatgctttccaagggagggagaaagac
ttcatcattttgtcatgtgtcagatccaatgaacaccagggaattggatttctgaatgat
ccacgtcgtctgaatgtagctctgactcgagcaaagtatggaatcatcattgtgggtaac
cctaaagtcctgtcaaagcaacctctgtggaaccacctgttgacttactacaaggagcag
aaatgcctggtggagggacccctcaacaacctcaaggaaagcctgatacagttcagcaag
ccacgcaagcttgtcaactcagccaacccgggtggcagattcatgagtaacattatgttt
gatgcccgagaagtacttatccctggtagtgtgtatgacagaacccagggatatcgtgaa
ccagctgtggtccgtcaccatgaccagctgagttatattggacctgagcgtgcctataca
ggccccgctctcaacctgccagtgccagtcaacatgttcatacctccaatgccacagccc
ttcaacactcaacagccggttcacatgaacaacaagaacaatccacgacagaaccagcgt
ggctacaactaccgccagaagccacctcgatacagcaacacacagaccacccagggctca
cagatgagtcagaatggcagtcagagccaggctagtcaggatggtatatcccagccgttc
tcgcagggtcctctgacccaagggccaatgtcgatgagccagtcgttccagatgagccag
cccggcctttcgggcctgtcgcagccagaactgtcccaggacagtttccttgctgacgac
tttaagtcgcaggctgacggcatgttgtcccaggactcgacataccagggcgaccgcatg
ttctatgcctcccagctgtcacaaggtcccttcaactag
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integrated database retrieval system
