KEGG   Prochlorococcus marinus MIT 9515: P9515_09151
Entry
P9515_09151       CDS       T00465                                 
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pmc  Prochlorococcus marinus MIT 9515
Pathway
pmc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    P9515_09151 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmc03400]
    P9515_09151 (mfd)
Enzymes [BR:pmc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     P9515_09151 (mfd)
DNA repair and recombination proteins [BR:pmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      P9515_09151 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter Helicase_C TRCF ResIII CarD_TRCF_RID UB2H AAA_30
Other DBs
NCBI-ProteinID: ABM72122
CyanoBase: P9515_09151
UniProt: A2BWG1
LinkDB
Position
complement(815315..818842)
AA seq 1175 aa
MSLNSLISYISNSQIITELVKRIEKNKELNIIGSSRYAKSIIINSLAKKENKNIILVSPN
EEIAYKWYGYFNSIGNRNILYYPPSKNLPYGSINKSKETEYSQLSVISKLINNDKEEKNI
IITTERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRR
GEIIDIYPVNNELPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIREKLE
LLSDEGVFNSEEITTKNNLDRYLGIIEEYPSNLINYINEDSIIVIDEIDDCTKFANNWYI
ESVNNFDHFKDEITQNLRSNNINIKVKPNLHEKFEYILKTFSDFIVINLYEFESKRNLDN
RFLLSDKRINSSSKNIGKLSKEINKFILNKDKVWILSAQPLRTRSLLFEHDCNTNYLEKP
NDLDNAYKLIDIPTPVIIKNKNNYEIEGFYLPIWKIILITDKELFSQQALFNNVFIRRRK
RSVNSNINVNKINPGDYIVHKNHGIGQFLKLEKINITGESRDYLVIKYLDGKISVAADQL
GSINRYRSTGKIMPKINKLGGAEWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYPED
GPWQKELEESFPYQPTPDQLTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAI
TSGKQVILLAPTTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDL
VVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMS
LSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAV
NKLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIE
DSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLA
MKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEIPEVKDTQVDLPINAF
IPATWILNREEKLDAYKEATECNTHKELTELATDWSNRYGVLPKPVESLILLMKLKLLAK
KCGFNKIKLKKPNIIIETRLKISTFKLIKKALPTNIQNKFSFEEDDQFSKITIRGIGITD
IQNQIDQLIYWLGLFVNEINNFDKNTVESKNLNIK
NT seq 3528 nt   +upstreamnt  +downstreamnt
atgagtttaaactccttaattagttatatttcaaattcacaaattataacagagttagta
aaaagaattgaaaaaaataaagaactaaatatcattgggtctagtagatatgcaaaatct
attattataaatagtttagcaaaaaaagaaaataaaaatattatacttgtgagccctaat
gaagaaattgcttataaatggtatggatattttaatagtataggtaacagaaatatctta
tattatccacctagtaaaaatttaccttacggatcaattaataaatcaaaagagactgaa
tattcacagttatcagttatctcaaaactaataaataatgacaaagaagaaaaaaatata
ataataacaactgaaagatctcttcaaccacatttaattaaaaaaaatatatttaagcaa
aaaataataacacttaataagggtttagctatagaaataaaagagttaacaagtcagtta
gtttcattaggttataacaaggaaaatcttacttcacaggaaggttcttggagcagaaga
ggagaaataattgatatatacccagttaacaatgaactacccataagaatagaattcttc
gataatattattgataaaattagagaatatgatccagtaactcaaagaacgttagatagt
attaataaagttgagattgtacaggttggatataattcattaataagagaaaagttagaa
ctactatcagacgaaggggtttttaattcagaagaaataacaactaaaaataatctagat
agatacttaggaataattgaagaatatccatctaatcttataaattatataaatgaagat
tcaattattgttatagatgaaatagatgactgcactaaatttgcaaacaattggtatatt
gaatcagttaataattttgatcatttcaaagatgaaattactcaaaacttacggtccaat
aatataaatataaaagttaaacctaatctacatgaaaaattcgagtatatattaaaaaca
ttcagtgattttattgtaataaacttgtatgaatttgaatcaaagagaaatttagataac
agatttcttttatcagataaacgtataaattcatcctctaaaaacataggtaaactttca
aaagaaattaataaatttatcttaaataaagataaagtctggatattatctgcacagcca
ttaagaacaaggagtttactctttgaacatgattgcaatactaattatttggaaaaacct
aatgatcttgataacgcttataaattaatagatattcctacaccagttattattaaaaat
aaaaacaactatgaaatagaaggtttttatctcccaatatggaagataattttaataaca
gataaggaattattttcacaacaagctttatttaataatgtctttataaggagaagaaaa
aggagcgtaaattcaaatataaatgttaataaaattaatcctggagactatatagttcat
aaaaatcatggtattggacaattcttaaaattagaaaaaataaatataacaggtgaatca
agagactatctagttattaaatatcttgatggaaaaataagtgttgctgctgatcaacta
gggagcataaacagatatagatctactggtaaaattatgcccaaaataaataaattagga
ggagcagaatggttaaaaattaaagataaaaatagaaaaataataaaaaaagttgcttat
gatattctaaaactttacgcaaaaagagagaaacttaaaggccatatatatcctgaagat
ggaccgtggcaaaaagaattagaagagtcattcccttaccaacctactcctgatcaacta
acagccgtgaaggaaatcaaaattgatatggaaagtgataaacctatggatagattagtt
tgtggagacgttggtttcggaaaaacagaagtagcagtaagagcaatttttaaagcaatt
acatcagggaagcaagtgattttacttgctccaacaacaattttagctcaacaacattgg
agaacttttaataatagattttcaccttatccaataaaagtttctttacttaatagattt
aaaactagtagtgagaaaaaagatatttatgctggtttaaaaaataataagattgattta
gttgtagccactcatcaaattttaggaaaagaaatcgaaataaaaaatttaggattgctt
gttattgatgaagaacaaagatttggagttagacaaaaagaaaaaattaaaaatattaaa
actaatattgacgtgttaactctatcggccacaccaataccacggaccctttacatgagt
ttgtctggccttagacaaatgagtttattaaatactcctccaccatccagaagatcaatt
aaaacatatttatctgaaattgatatggatgtaatcagaactgcaataagtcaagaactt
gatagaggtggtcaaatcttttacgttcttccaagaatatcggatattgatcaagccgtt
aataaattaacaaatatgtttaatgatttaaaatttatagttgctcatggccaaatgaat
gaaatagatcttgaaaatgcaatgattgcatttaataatggcgaggtagacttgatgatt
tgcacaacaattattgaaagcggattagatatacccaaagtaaatacaatcataattgaa
gattcacataaatttgggctatcgcaactctatcaattacgaggaagagtcgggagaagt
gggatacaagctcatgcatggttattttatccaaatttaaacaacattaatgaagcttcc
aagcaaaggctaaaggctataaaagatttttctgaactaggaagcggatatcaacttgcc
atgaaagatatggagataagaggagttggaagtttattgggggaagagcaaagtggaaaa
gttaatgcaattggatatgatctatatattgaaatgttacacgaagcaatctcagaaata
aatggtcaggaaataccggaagtaaaggatactcaagtagatttgccaattaatgctttt
atccctgcaacttggatattaaaccgagaagagaaactagatgcttataaagaagctaca
gaatgtaatacccacaaggagcttacagagctggcaactgactggtctaatagatacgga
gttttacccaaacctgttgaatctttaatacttttaatgaagttaaaattattagcaaaa
aaatgtggctttaataaaattaaacttaaaaaacctaacataataatagagactagatta
aaaatctcaacatttaaacttattaaaaaagcgttaccaacaaatattcaaaataaattt
agttttgaggaagatgatcagttctcaaaaataacaattagagggataggtattactgat
atacaaaatcaaattgatcagttaatttattggttaggtttatttgtaaatgaaataaat
aacttcgataaaaatacagttgaatccaaaaacttaaatattaaataa

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