Prochlorococcus marinus NATL1A: NATL1_10511
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Entry
NATL1_10511 CDS
T00467
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pme
Prochlorococcus marinus NATL1A
Pathway
pme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NATL1_10511 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pme03400
]
NATL1_10511 (mfd)
Enzymes [BR:
pme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NATL1_10511 (mfd)
DNA repair and recombination proteins [BR:
pme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NATL1_10511 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABM75609
CyanoBase:
NATL1_10511
UniProt:
A2C299
LinkDB
All DBs
Position
968831..972334
Genome browser
AA seq
1167 aa
AA seq
DB search
MSLESIAKYLEKHHLTTELIERTNREERLTLTGASRTAKALITTSLAKNESKRLLVIVPT
LEEATRWYPLVKDCGWTKTCLYPTSEVSPYETTQVTSEIIWGQLQVLSDILELKDDENIA
IIATERSLQPHLPPFEYLKEKCIKLNVGDEINLSDLSLKLSESGYIKSNNIDQEGTWTRR
GDIIDIYPVSSELPIRLELFGDLLDKIKEFDPISQRSLDQINNVCITPTGFDPLIINKLI
STDNKDISSLFTNDEFSELVNSNKLDSAKKYLGVAFDKPSSLLDYLDDKTFIVVDERLQG
ISHGKAWYNIVNENYTDVITTIKGSEGIKTIFKPNLHKDINDIYDSLNNYKGIDITDLED
TTKKTNVFSISSKVHNWLPNQYGKISLSLKDYIKDKYSIWIISAQPSRAVSLLEEHECIS
KFIPNNTDLNGIKNIIDDNIPVAIKNKNEGEIEGFYLPAWKIALLTDKEFFGQQNISTTG
YIRRRKQSQSKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNINGESRDYLVIKYMDGKLS
VAADQLGSLGRYRSSNAKTPTISKLGGANWNKIKEKAKKSVKKVAIDLIKLYAERSKEKG
YKFPCDGPWQSELEDSFPYALTPDQATATSQVKSDMESEKPMDRLVCGDVGFGKTEVAIR
AIFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYPIKVSLLNRFKTNSEKKHIVSGLK
AGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIP
RTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIK
GIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRV
NTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLG
SGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSVDDTQID
LPVTAFIPGDWITDPDEKINAYRLATQCENNDSLVQFASNLVDRYGTLPKAVESLIEVMK
LKIIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDRCSTVTIR
GLGILDSDKLLDQLTEWLKLMNSEINA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttagagtcaatagcaaagtatttagaaaagcatcatttaacaactgagttgatt
gaacgaacaaatagagaagaaagattaacattaacaggagcatcacggacagcaaaggca
ttaataacaacttcacttgctaaaaatgagtccaaaagattattagtaattgttccaaca
ttagaagaagcaactagatggtatccccttgtaaaagactgcggttggactaagacatgt
ttatatccaacaagtgaagtctcaccatatgaaactactcaagttacttcagaaatcatt
tggggtcaattacaagtactaagcgatatattggaattaaaagatgatgagaatatcgca
ataattgcaacagaaaggtctttacaaccacatctgcccccatttgaataccttaaagaa
aagtgtattaaattaaacgtgggtgatgaaataaatctaagtgatttatctttaaaattg
agtgaaagtggatatatcaagtctaataatatagatcaagaaggaacatggacaagacgc
ggagatattattgatatttaccctgttagtagtgaacttccaattagattagagttattt
ggtgatctattagataagattaaagaatttgatccaatttcacaaaggtcattagatcaa
atcaacaatgtatgcataacacccacaggttttgatccactaatcattaataagcttata
tcaactgacaacaaggatatatcgagtttatttactaatgatgagttctctgagttagta
aattcaaataaattggattcagcaaagaaatatttaggagttgcatttgataagccttca
tcattattagattatttagatgataagacatttattgttgttgatgagaggcttcaaggt
atatctcatggaaaagcttggtataatatcgttaatgaaaattatacagatgtaattact
actataaaaggtagtgaaggaataaagactatatttaaacctaatcttcataaagacatt
aatgatatatatgattctctaaataattataaaggtattgatataacagatttagaagac
actacaaagaaaacgaatgtttttagtatttcaagcaaagttcataattggctacctaat
caatacggtaaaataagtttatctttaaaagattacattaaggataaatattctatttgg
ataatttcagcacaacctagtcgtgcagtttctttattagaagaacatgaatgtatctca
aagtttatacctaacaataccgatcttaatggtatcaaaaatattatcgatgacaatatt
ccagtagctattaaaaataaaaatgagggtgaaattgaaggattttatcttcctgcatgg
aaaattgcactattaacggataaggagtttttcggacaacaaaatatttctacgactggt
tatataagaagaagaaaacaatctcaaagtaaaaagatagatcctaataagatgaaacca
ggcgattatgttgttcatagaaatcatggaattggtttatttcagaaaattgaaaaatta
aatattaatggagagtcaagagattatttggtaataaaatatatggatggaaagttaagt
gttgccgcagatcaacttggaagtttaggtaggtatagaagttcaaatgcaaagactcct
acaattagtaaattaggaggggctaattggaacaaaataaaggaaaaggcaaagaaatcc
gttaaaaaagttgctattgatttaattaagttatatgcagaaagaagtaaagaaaaaggg
tataaatttccatgtgatggtccctggcaaagcgaattagaagactcatttccatacgca
cttacacctgatcaagcaacagctacatctcaagttaaatctgatatggaaagtgaaaag
cctatggatagattggtttgcggcgatgttggatttggaaaaacagaagttgctatacga
gcaatatttaaggctattacctcaggaaaacaaatagctttattagcaccaacgactgta
ttatctcaacaacattggagaactatttctgatcgatttgctccttatcctataaaagtt
tcattactcaacagatttaaaacaaatagtgaaaaaaaacatatagttagtggcctgaaa
gctggacaaattgatgcagttgttggtacacatcagctcttgaacaaaaaattagtttat
aaggacttgggacttctagttatagatgaagaacaacgttttggagttaatcaaaaagag
aaaataaaggagttaaaaaaaagtgtagatgtattaactctttcagcgactccaattcca
agaacactctatatgagtctttctggtgtccgtgaaatgagtttaataacaacaccgcct
cccctacgaaggccgattaaaacacacttagcacccctcgataatgaaataataagaagt
gcaatttcgcaagagattgatagaggtggccaaatattttatattgttcctcgaataaaa
ggaatagaagatgtagcagagaaattaaaaattatgatcccaaatgtgaaattattgatt
gcacatggtcaaatggaggagggagcattagagaatgcaatgcttgcatttaatgcagga
gaagccgatattttgctttgtacaactattgtagaaagtggattagatattcctagagta
aatactattttaattgaagattctcacaagtttggtttatctcaactttaccaattgaga
ggcagagtaggccgaagtggagtacaagcacatgcttggttattttatccaagcgatgag
aaattaaatgagacctcaaggcaacgtttaaaggctataaaagaatttagtgatttgggc
agtggttatcagttagccatgagggacatggaaattagaggcgttggaaatatcttaggt
attgaacaaagcggacaaatggaaacaataggatttgatttgtatatggaattattgcag
gaaactattgccgaaatacaggggcaagacattcctagtgttgacgatactcaaatagat
ctacctgttacagcttttataccgggagattggataactgatccagatgaaaaaataaat
gcatatagattagccacacaatgcgaaaacaatgattcattagttcaatttgctagcaac
ttggttgatagatatggaacattaccaaaagcagttgaatcattaatagaagtaatgaaa
ttaaaaataatcgctaaaaagtgtggcttctcaagaatcaagttatccaaaccaaatgtt
gagcttgagaccatgatggatgagccagcattcaagttactaagaaaaggtttggctaat
catcttcatggaagatttatttacaagaaaggggataggtgttcaacggtgactattcga
ggactcggaatcttggatagcgataaacttctagatcaattaacagaatggctaaaactt
atgaattcagaaataaacgcttaa
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