Pseudomonas mediterranea: E3Z27_13525
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Entry
E3Z27_13525 CDS
T08284
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E3Z27_13525 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_13525 (ligD)
Enzymes [BR:
pmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E3Z27_13525 (ligD)
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E3Z27_13525 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
SH3_12
Tudor_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QHA82622
UniProt:
A0A6I6QA55
LinkDB
All DBs
Position
complement(3103062..3105020)
Genome browser
AA seq
652 aa
AA seq
DB search
MAKADRESAPTSEKTESSRPQRGRKERLPERLPPQLATPVEQPPSGEWRYEVKFDGYRLL
TRIEGGEVRLFSRDHEDWTERLKLHAQALTELNLGDSWLDGDLVLLDETGQSDMGALRDA
FEIGRTVDMVYVLFDAPFLNGEDLRQTPVEERRAALRKVLKHHGGKRLRFSEAFSASEDE
ILESASALSLDRVVGKRQGSPYVSRRSSDWVNLKCRLRQAFVIVGFTRSQDKRNGFGALL
LAVNEPSGLVYAGRVSSGLSRDEIKRLQERLSVQDASPLAKPVNPTQGRGLQWVEPDLVC
EIEFTEWTASGLVRQAAVVALLEDMPANKIVREHPLPKRTRTPEPKHGGKKREVDVGGVK
ITHPERVIDSVSGVQKVELAQYYADIAPWILPHLKQRPVALLRAPDGIGEEQFFQKHADR
LEIPHIKQLDPGLDPGHAALMEIDSLQALISAAQMGTVELHTWTATHDRIETPDLLILDL
DPDPSLPWSAMLEATRMTLALLDELGLQAFLKTSGGKGMHIVVPLARGEGWDATKAFAKA
ISQFMTRQMPEQITATMGPKNRIGKVFVDYLRNARGASTVAAYSVRARPGLPVSVPVARA
ELDGLRNAQQWDVQTVLERVRGLGADPWEGFSHRQRITARMWEQLDAEKPGE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggccgatcgtgaatctgcccctacctccgaaaaaaccgagagcagccgcccc
caacggggtcgcaaagaacgtctccccgaacgcctgccgccgcagctggcaacgcccgtg
gagcaaccgccctccggcgaatggcgctatgaagtcaaattcgacggctatcggctgctg
acccgcatcgagggtggcgaagtccgcctgttcagccgcgaccacgaggactggaccgaa
cgcctcaaactgcatgcccaggccctgaccgagctgaacttgggagacagttggctggac
ggcgacttggttctgctcgacgaaaccggccagtccgacatgggcgccctgcgcgacgcc
tttgaaatcggccgtaccgtggacatggtctacgtgctgttcgacgcccccttcctcaat
ggcgaagacttgcgccagacacctgtggaagaacgacgggcagccttgagaaaagtcctc
aagcatcacggcggcaagcgattgcgcttctccgaagccttttccgccagcgaggatgag
atcctggaaagcgccagcgccctctcgctggaccgtgtggtcggcaaacgccagggcagc
ccttatgtgtcacggcgcagcagcgactgggtcaatctgaagtgccggctgcgccaggcc
tttgtgatcgtcgggttcacccggtcgcaagacaagcgcaacggcttcggtgccttgttg
ctcgcagtcaacgaaccttcaggcctggtgtatgccggccgggtcagcagcgggctcagc
cgggatgaaatcaaacgcttgcaggagcgactctccgtgcaggatgcctcgcccctggcc
aaacctgtcaacccgacacaagggcgcggcctgcagtgggtcgaacctgacctggtctgt
gagatcgagttcaccgaatggaccgccagcggcttggtacgccaggccgccgtcgtggcg
ctgctcgaagatatgccagcgaacaagattgtccgcgagcacccgctgccgaaaagaacc
aggacgccggaacccaagcacggcggcaaaaaacgtgaggttgacgtcggcggcgtgaaa
atcacccatcccgagcgcgtcatcgacagcgtcagtggcgtgcagaaagtcgaactggcc
cagtattacgcagacatcgccccgtggatcctgccccacctgaaacagcgccccgtcgcg
ctgttgcgggcaccggacgggatcggcgaagaacagttctttcagaaacatgccgatcgc
ctggagatcccccatatcaagcagctggatccgggattggacccaggccatgccgccctg
atggaaatcgacagcctccaggcgctcatcagcgcggcgcagatgggcacggtggaactg
cacacctggaccgccacccacgaccggatcgaaacgccggacctgctcatcctggacctg
gaccccgatccatcgctgccttggagcgccatgctcgaggccactcgcatgaccttggcg
ctgctcgatgagctgggcctgcaggcctttctcaagaccagcggcggcaaaggcatgcac
atcgtcgtgccgctggcacgcggcgaaggctgggacgccaccaaggccttcgcaaaagcg
atctcacagttcatgacccgccagatgccggagcagatcaccgcgaccatgggccccaag
aatcggatcgggaaggtgttcgtcgactacctgcgtaatgcccggggcgccagcacggtc
gccgcgtactcggtacgcgcccggccgggcttgccggtatcggttccggtcgccagggcc
gaactcgacggcttgcgtaacgcccagcaatgggatgtccagacggtccttgaacgcgtc
aggggcctgggagccgatccatgggaaggtttcagccatcgccaacggatcaccgccagg
atgtgggagcaactggacgcagaaaagcccggtgagtga
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