Paraburkholderia megapolitana: FNZ07_22445
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Entry
FNZ07_22445 CDS
T06515
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmeg
Paraburkholderia megapolitana
Pathway
pmeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNZ07_22445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmeg03400
]
FNZ07_22445 (mfd)
Enzymes [BR:
pmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FNZ07_22445 (mfd)
DNA repair and recombination proteins [BR:
pmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FNZ07_22445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QDQ83904
LinkDB
All DBs
Position
2:complement(2011611..2015087)
Genome browser
AA seq
1158 aa
AA seq
DB search
MPDTAASSSSLSPVALVKAGQRFVFDGTHGSSDALLIARYHLAYRQQVPLLAVVCANAVD
AQRLTQEIAFFAPEARVRLLPDWETLPYDSFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFMAAYTFSFSQGERLDEAKLKAQLTLAGYDHVSQVVRPGEYCVRGSLID
LFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR
WREVFEGDPSRASIYKDMGNGVPSAGIEYYLPLFFDETATLFHYLPDNAQLAFVGDLDTA
IKRFSADTKQRFNFLSHDRERPILEPQRLFLSDDDFYTFAKPFARLALPSNAGGGWSTPL
PNLAIDRHADDPVAALRAYLATTPNRVLFAAESAGRRETIAQLLIDNHLQPGSSDSYEDW
LTSDTRFALGVAPLGIGFTVPAEGFAIVTETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKIGDPVVHSQHGIGRYMGLVTMDLGEGDTEFLHLEYASNSKLYVPVSQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFSLEPRDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNASIQLINDGSVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPTANTILIHRSDKFGLAQ
LHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGT
GEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKEGREPDLTAPLAATTEINLHAPAILPAD
YCVDVQERLSLYKRLASCEYDDAIDGIQEELIDRFGKLPPQAQALVETHRLRLAAKPLGI
SKIDAGETVIGLQFVPNPPVDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLSVRVATVK
ETLRALGAPARSTAAAAR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactgctgcttcttcgtcttccctgtcgccggtcgctctcgtcaaggccggc
cagcgcttcgttttcgacggtacgcacggttcgtccgacgcgctgctgatcgcccgctac
cacctcgcataccggcaacaggtgccgttgctggcggtggtgtgcgccaatgccgtcgac
gcgcagcgactcacgcaggaaatcgctttcttcgcgcccgaagcgcgcgtgcgtctgctg
cccgactgggaaacactgccttacgattcgttctcgccgcaccaggacctggtgtcggag
cggcttgcgacgctgcacgacctcggcgaaggtcgctgtgacattctgctcgtgcccgcc
acgacggcgttgtatcgcatgccgcccgcgtcgttcatggcggcctatacgttctcgttt
tcgcagggcgagcgcctcgacgaagcgaagctcaaagcccagttgacgctggccggctac
gaccacgtgagccaggtggtgcggcccggcgaatactgcgtgcgcggctcgctgatcgat
ctgttcccgatgggttcgccgctgccttaccggatcgatctattcgacgatcaggtcgat
tcgatccgcgcattcgatcccgacacgcagcgcagcctgtacccggtacgcgatgtacgc
ctcttgcccggccgcgagtttccgttcgacgaagccgcgcgcaccgcgtttcgcagccgc
tggcgcgaggtgttcgaaggcgatccgagccgcgcttcgatctataaggacatgggcaac
ggtgtgccgtcggcgggtatcgaatactatttgccgctgtttttcgacgagaccgcgacg
ctgtttcactatcttccggacaatgcgcagctcgccttcgtcggcgatctggatacggcg
atcaagcgcttctccgccgatacaaaacagcgcttcaatttcctctcgcacgatcgcgag
cggccgattctcgagccgcagcggctgttcctctccgacgacgatttctacacgttcgcg
aaaccattcgcacggctagcactgccgtcgaacgcaggtggcggctggtcgacgccgctg
ccgaacctcgcgatcgatcgtcacgccgacgacccggtcgccgcactgcgcgcgtatctc
gccacgacgccaaaccgcgtgctgttcgcggccgaatcggcgggccgccgcgagaccatc
gcgcagttgctgatcgacaatcacctgcaaccgggctcgagcgacagctacgaagactgg
ttgacctcggacacgcgcttcgcactcggcgtggcgccgctcggcatcggcttcaccgtg
ccggccgaaggcttcgcgatcgtcaccgaaacggaactgtacggaccgctcgcgcgccgc
gcgggacgccgtcgccaggaacaggccagcaacgtcgactcgatggtgcgcgatctgtcc
gagctgaagatcggcgatccggtcgtgcattcacagcacggcatcggccgctacatgggg
ctcgtgacgatggatctcggtgaaggcgacaccgagttcctgcacctcgaatacgcgagc
aacagcaagctctacgtaccggtctcccagttgcacgtgatctcgcgctacagcggcgcc
gatccggaaagtgcgccgttgcactcgctcggttcgggccaatgggaaaaagcgaagcgc
aaggccgcacaacagattcgcgataccgccgccgaactgctcaacctgtacgctcgtcgc
gccgcacgcgaaggtcatgcattctcactcgaaccgcgcgactacgtgaagttcgccgaa
agcttcggcttcgaagaaacgcccgatcaagccgccgcgattgcggccgtgatcggcgac
atgacaagcggcaaaccgatggatcgtctcgtgtgcggcgacgtcggtttcggcaagacc
gaggtagcgttgcgcgcggcgtttatcgcggtgatgggcggcaaacaggtcgcgctgctc
tcgccgaccacgctgctcgccgagcagcacacgcaaaccttcaccgaccgcttctccgac
tggcccgtgcgcattgccgaactgtcgcgcttcaagtcgacgaaggaagtcaacgcgtcg
atccagctgatcaacgacggtagcgtcgatatcgtgatcggcacgcacaagctgctgtcg
tcggatgtgcagttcaagcggctcgggcttgtcatcatcgatgaagagcaccgcttcggt
gtgcgccagaaagaagcgctgaaagcgctgcgcgccgaggtcgacgtgctgacgctgacc
gcgacgccgattccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtg
atcgccaccgcaccgcaaaagcgcctcgcgatcaagaccttcgtacggcgcgaagaagac
ggcgtgattcgcgaagcgatgttgcgcgaactgaagcgcggcggtcaggtgtacttcctg
cacaacgaggtcgagacgatcgagaatcgtcgcgcgatgctcgaagcgctggtccccgaa
gcacgtattgcagtggcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgc
gatttcgtcgcccagcgcgcgaacgtgctgttgtgcacgacgatcatcgaaaccggcatc
gatgtaccgaccgcgaacacaattctgatccaccgctccgacaagttcggtctggcgcag
ttgcaccagttgcgcggtcgcgtcggtcgctcgcatcaccaggcgtattcgtacctgctc
gtgcacgatccgcagggtctgacgaaacaggcgcagcgccggctcgaagcgatccagcag
atggaagaactcggtgcaggcttctacctcgcgatgcacgatctcgagattcgcggcacc
ggcgaagtgcttggcgacaagcagtcgggcgagatccaggagatcggtttccagctctac
acggacatgctcaacgacgctgtgaaagcgctcaaggaaggtcgcgaacccgatctcacg
gcaccgctcgccgcgactaccgagatcaatctgcacgcccccgcgatcctgcccgccgac
tactgcgtcgacgtgcaggaacggctgtcgctgtacaagcggctcgcgagttgcgaatac
gacgacgcaatcgacggcatccaggaggaactgatcgatcgcttcggcaaactgccgccg
caagcacaggcactcgtcgaaacgcaccggctgcggctcgcggcaaaaccgctcggcatt
tcgaagatcgatgcgggcgaaacggttatcggtttgcagttcgtaccgaatccgcctgtc
gacgcgatgcggatcatcgagatggtgcagaagcacaaacacatcaagctcgcgggtcag
gacaagctgcgcatcgaaacgcgcagccccgatctgtcggtgcgcgtcgcgacggtcaag
gaaacgctgcgcgcgctgggtgcgccggcgcgtagtacagcggctgcagcgcgttga
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