Poecilia mexicana (shortfin molly): 106906992
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Entry
106906992 CDS
T08022
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106906992 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmei03400
]
106906992 (lig4)
Enzymes [BR:
pmei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106906992 (lig4)
DNA repair and recombination proteins [BR:
pmei03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106906992 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
106906992
NCBI-ProteinID:
XP_014827974
Ensembl:
ENSPMEG00000021353
UniProt:
A0A3B3XTK8
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MEGTSKSGAAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHAALH
KDNPKTTDSFYPSMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSVS
LSEVSIELFSAFKPMLAAVANIRNIEKQMGNSPFYLETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAFNPTAGTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEVLQTVFTPVKGRIHVVPKTEMGTMQDV
VNALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLCGIAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGVEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRSKASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGVIDHFKPQDLSGVSKE
TDMFEDVEFCILNGTEGHPKSELEKGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLISS
NQHDVVWASWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLR
EVFSRIDGEQAAAASVSAAQVEERYGWDDLPTSMFRPFTFYFDILDPKSATGATCLDIRA
LEVRYHGGTVAKALEEGVSHVVVEEETRLLELRTLRRRFRKKFKIVRDSWVTDSIAAGHL
MDDADYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacgtccaaaagcggagcggctgctgcagagcccagcgttgctgctcaggtt
cctttccttcacttgtgcacaactttagagaaaatccagaagtccaaactccgtccagat
aaatccaagatccttggggatttcattgaatcatggcggaaatttcatgccgctctccac
aaggacaacccaaaaactacagactccttctacccttctatgcgcctcatcgtcccgcct
tttgagcgggagcgaatggcttacggcatcaaagagagcatgctagccaagctctacatt
gatgttttaggcctcccaaagaatggcccagaagccagtaagctcctgaactaccgtgct
ccgactacatcccaaggagaagcgggggatttcgccggcatggcgtactttgtgctgaag
aagcgatgtaccagccaaggaaacctcagtatcaaagaggtcaatgactttcttgactca
gtggccatcaacaatgccagcaagcagaaggatcaggtgaaaaagagcctgttgcacctc
atcacacagagctctgctctggagcaaaagtggcttattaggatgattctgaaggacatg
aagcttggagtcagcaaggaaactgttctccaggtcttccacccggacgccgcggagctc
tacaatgtcaatacggatttaaagaaggtgtgccagcagctgcacgacccctctgtgtct
ttaagcgaagtctcgattgaactcttctctgccttcaagccaatgttggcagcggtggcc
aacatccgcaacatcgagaagcagatgggcaacagccccttctaccttgaaacgaagcta
gatggggagcggattcagcttcacaaggacggagacgtgtacaagtacttcagccggaac
gcgtttgaatacacgcagcagttcggaggatcgccactcgaaggatcgctcactccttac
atccacaacgtgttcaaaagtaacgtcgtaaactgcatcctggatggcgagatgatggcg
ttcaacccgacggcagggaccttcatgcagaaagggagcaaatttgacatcaagagactg
gtggacgactctgagctgcagacgtgcttctgtgtctttgacgtgttgctggttaataat
caaaaactcggtaaagaaccgctgaagaagcggtatgaggtcctccagacggtcttcacc
cctgtcaagggtcggatacatgtggtgccaaagacagaaatgggaaccatgcaagatgtt
gttaatgctcttaacgatgccattgataacagggaagaagggattatggtgaaggaccct
ttgtccatctacaaacctgataaacgaggggagggttggctgaaaataaagccggagtat
gtggacggcttgatggatgagctggacctgctgattgttggtggttactgggggaaaggg
agacggggcgggatgatgtcccactttctgtgtggaatcgcagaagcgccaaagcctggt
gagaagccgtcggttttccactccttctgccgaattggctcgggttacaccatgaaagag
ctgtacgaccttgggctgaagcttgcgaagcattggaaagtctaccggaaaaatgacccg
ccggcgtccatcctctgtggagtggagaaaccggaggtgtacatcgagccctgcaactcg
gtcatcatccaggtcaaagcggccgagatagtcggaagcgacatgtacaagaccaactgc
accctgcggttccccaggatcgaaaagatccgcgaggacaaggagtggcaccagtgcatg
actctggcagagctggatcagttccgcagcaaggcgtccgggaaactggcctcgcggcac
cttcacatcgacggcgacgaaccacagaagaagaagcggaagctgcctgtcaaacccaag
aaggtggttggagtcattgaccacttcaagccccaggacctgtccggggtttccaaggag
acggacatgtttgaggatgtggagttctgcatcctgaacggcactgaaggtcacccaaag
tcagagctggagaaaggcgtggccaggtgtggcggcattgtggtccagaacccgggacgg
gacacctactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctgatttcctcc
aatcagcacgacgtggtctgggcgtcatggctgctggagtgcctggatcagaaggaagtg
gtgccgtggcaaccgcgccacatgatccacatgtcgccctcgaccagggaacacttcgcc
aaggagtatgacagttacggcgacagctactttgtcgatacggacgagcagcagttgagg
gaagtgttcagcaggatcgacggtgagcaggcggcggcggcgtccgtcagcgcggcgcag
gtggaggagcgttacggctgggacgacctccccaccagcatgttcagacccttcaccttt
tactttgacatcttggatccgaaaagcgcaacaggtgctacctgtctggacatcagggcg
ctggaggttcgataccacggagggacggtggcgaaggcgctggaggaaggagtttcccac
gtcgtcgtcgaggaagagacgagactcctggagctgaggacgctgaggcgccgcttcagg
aagaagtttaagatcgttagagactcatgggtgaccgactccatcgcggcagggcatctg
atggacgatgccgactacctggtttga
DBGET
integrated database retrieval system
