Poecilia mexicana (shortfin molly): 106915506
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Entry
106915506 CDS
T08022
Symbol
col19a1
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X1
KO
K24340
collagen type XIX alpha
Organism
pmei
Poecilia mexicana (shortfin molly)
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmei00536
]
106915506 (col19a1)
Glycosaminoglycan binding proteins [BR:
pmei00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106915506 (col19a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106915506
NCBI-ProteinID:
XP_014838621
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MNCYLIRWVAFVWIVNSVPCAFGMVVSEQTGGVCPSLSVEDYRFSDVLDRPLQITGFDLT
EKFLLRKGTVTEDLPSFRLGSSPLIKPTKSIFPDGLSNEYSLVTIFRVRRTTKKDRWYLW
QIFDQSGSSQVSVVVDGDKKAVEFSSQGLLKNSFRYTFKSRDLHALFDRQWHKLGISVHS
DTVSIYVDCTLAEKKMTDERDSIDLNGRTLISTRVEDGRPVDIELRQILIYCDPYMAEME
NCCELLEPQCGVNRTIIGTSPPLVTAQSPLMPSQPTSQSIDTCHCPGEKEDAGVPGVLGL
FKQNREKGDKGELGSEGQKAIDGERGDEGLAENPGLPGPRGDKGEKGSAGVPGQPGKEGK
RGRRGKPGEPGPRGPPGPSGTVEGASAKREKGECGVPGEKGERGDPGQPGAEGTGGAKGQ
KGDVGPPGPPGSVMTAHGLRQLSGTDERAQKGEKGDEGEKGAQGLPGLKGSMGPPGLKGD
QGLEGNQGLPGSTGLPGLPGDSGLPGEPGVPGRDGLKGEKGDSGAVIGPQGPPGPKGEPG
EPGSAYMSDGLSLSRGSRGPKGERGVPGVPGDHGEKGEPGESIVGPAGPPGKPGAEGLRG
PPGLSGPPGAPGREGSPGRPGPPGPAGPPGEPTALPIVGDMGALLKNACSLCQTRVPGLP
GQKGEKGSPGVHGVEGLVGEKGDPGVRGPMGNPGKEGPKGVKGERGFPGPSGDKGDEGPP
GAPGLPGVTGRTGAPGLVGRPGSMGPQGSKGEKGNDGAPGRQGLPGPPGAPYVEGNGMSS
LYKLQSGGAILGPPGAPGAPGPKGDEGPVGEPGPMGLPGLEGLPGAKGDIGLPGPPGTSG
PPGKPGTRGEPGIPGEPGERGPIGETGFPGPEGPQGVPGRPGKDGTPGYKGSTGTPGDRG
SKGERGDPGIPGERGIQGERGRMGDPGMVGAMGPQGVKGDPGPPGQLGSVKLLDDPSFTE
ELKIFIQSEVMRIFEEKVSGAATQQKTPAGILASPFQGPPGPPGKDGSSGPPGEPGPPGP
QGYRGQKGERGQLGLGLPGDPGPTGPPGPPGIPSRGPPGSPGPRGPPGTCDPNDCILPTL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctacttgataagatgggttgctttcgtttggattgtgaactctgttccctgt
gcttttggaatggtcgtgagcgaacaaacaggtggtgtgtgtccctctttgagtgttgag
gattacagattttctgatgttttggaccgtcctttacagattacaggatttgacctcaca
gaaaaattccttctccgaaagggaacagttacagaagacctgccatcatttcgactggga
agcagccctcttataaaaccaacaaaatcgatatttccagacggactttcaaatgagtat
tccctggtcaccatcttccgtgtgagacgaactacaaaaaaagaccgctggtacctttgg
caaatatttgaccaatcaggaagcagtcaggtgtcagtggtggttgatggtgataagaaa
gcagtggagttttcttcccagggtctgctgaaaaactctttccgctacacgtttaagagt
cgtgacctgcatgccctctttgatcgccaatggcacaagcttggcatttctgttcacagt
gacacagtttccatttatgtcgattgcacgctggctgaaaagaaaatgactgatgagagg
gacagcatcgatctcaacgggcgcacactcatcagtacacgagtggaagatggaaggcct
gtggatattgagttgagacaaattctgatctactgtgacccttacatggctgaaatggaa
aactgctgtgagctgcttgagccacagtgtggagtcaacaggacaattattgggacctcc
cctcctctggttacagcccagagtcccctgatgccgtctcagccgacctcacaatcaatt
gacacatgtcactgtccaggagagaaggaagatgctggtgttccaggcgtgcttgggctg
tttaaacaaaacagggaaaaaggagacaagggggaacttggatcagaaggtcaaaaggca
atcgatggagagaggggggacgaaggcctggctgaaaacccagggctgcctggccctcga
ggagataaaggagaaaagggatcagccggagtgccgggtcagccaggcaaagagggcaag
aggggacggagaggaaagccgggggagcctggaccaagaggcccacctggtccttcagga
accgtagagggagcaagtgcaaagagggagaagggggagtgtggcgtccctggggaaaag
ggagagagaggagatcccggtcagccaggtgccgaggggactggcggcgcgaaaggacaa
aaaggcgatgttggtcctcctggtcctcctggttctgtgatgacagctcatgggttaaga
cagctctctggaactgatgaaagagcccagaagggtgagaagggagatgagggcgagaaa
ggagctcaaggactgccgggcctaaagggaagcatgggacctccgggactgaagggagat
caaggattggagggaaatcaaggtctacctggatccactgggctccctggactcccaggc
gattctggcttaccaggggagccgggggtgcctgggagagatggcctgaaaggagaaaag
ggagactctggggcagtgattggtccacaggggcctcctggtcctaagggggagcctgga
gaacctggcagtgcatatatgagtgatgggctgtctctgagtagagggtctcgtgggccg
aagggtgaacgaggtgtgcctggagtgcctggagaccacggcgaaaagggagaacctgga
gagagtatcgttggccccgcgggacccccagggaagccaggagctgagggtctccgtgga
ccaccgggtttatccggccctcctggagctccaggaagagagggctcccctggtagaccg
ggtccaccgggccctgctggacctccaggtgaaccaactgccctgcctatcgttggagac
atgggtgcattacttaagaacgcctgcagtctttgccagacaagagttcctggtctgcct
gggcagaagggagagaagggttcccctggagtgcacggagtggaaggcttggtgggagaa
aagggggatccaggtgtaagaggtccgatgggtaatccaggaaaagaaggcccaaagggc
gtaaagggagagagaggcttcccaggcccttccggagacaagggtgatgagggccctcca
ggagctccaggacttccaggcgtaacaggtcgaacaggagccccgggacttgtaggtaga
cctggttctatgggcccacaaggatcaaagggagaaaagggaaacgatggagctccaggc
agacaaggacttccaggacctccaggtgcgccgtatgtggagggaaacgggatgagcagt
ctatacaagctgcagagtggtggagctattttaggacctcctggagcgcccggtgctccg
ggcccaaaaggagatgaaggacctgtcggggaaccaggacccatgggcttacccgggctc
gaagggcttcccggtgccaagggagatatcggcctgcctggccctcctgggacatcaggt
cctccagggaaacccggaacacgcggagagccagggatcccaggagagccgggcgagagg
gggcccatcggagagactggattccctggacccgaggggcctcaaggtgttcctgggagg
cctggaaaagatggaactcctggatacaagggctccacaggtacaccaggcgacagagga
tccaaaggtgaacgtggtgatccaggcattccgggagaaagaggcattcaaggtgaaagg
ggccgcatgggcgaccctggcatggttggagcgatggggccgcaaggtgtaaaaggagat
cctggcccccctgggcagctggggagcgtaaagctcctggatgatcccagctttacagaa
gaactcaaaatctttatccaaagtgaagtaatgaggatttttgaagagaaagtgtctggc
gccgccacgcaacagaagacacctgccggcatcttagcttcacctttccaaggtcctcca
ggacccccgggcaaggatggatcctcaggtccaccaggagagcctgggccacctggacct
caaggataccggggtcagaaaggagaacgaggacagcttggtctggggttaccaggagac
ccaggacccactgggccaccagggccacctgggatcccttcacgaggcccccctggctct
cctgggccccgtggacccccggggacttgtgacccgaatgactgcattcttcctaccttg
taa
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