Poecilia mexicana (shortfin molly): 106922290
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Entry
106922290 CDS
T08022
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106922290 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmei03021
]
106922290 (pcf11)
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106922290 (pcf11)
Transcription machinery [BR:
pmei03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106922290 (pcf11)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106922290 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
106922290
NCBI-ProteinID:
XP_014850059
Ensembl:
ENSPMEG00000000895
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MDCLLLRGNAIGPAAVAWFGCRSWKMEDQTAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENIQFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLIASFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSLDTAWPIKPLPHNFNSTSSIHVN
PRFLKQPEEKAQTQSVPAKPAPVAPAPPPPPLAVPQTAPAGLTQEQLIRQQLLAKQKQLL
ELQQKKIELELEQTKAQLAGQGGLVLPPPIGSVPAEASPSQRPGQQVPPPIRPWIPPQSP
ADPKLSTRDPRLNRSGPPTAPQPAAKRQSPHPPGASAAPVEKRAPEKPPRQEKNRPPRKD
PPEEKLKSKSPSPLARGLQSRSKQAEAETPKPAEAPRKDPRLKKRLSEKPAEAKDDDVKE
KKRCVDKKERDDAPRRAEPPRSNKTKPLNGLAPKHDHLEPADKPDPKPGTATTRRKRTHS
RSRSRSPTSSPKRKDRRSPKSHVRSGSLSPSHKAGKPRRVRGDDTPHGKPGRDDRPGAKK
AQSDSRRPKRLQEERRSESRDSHSPRGHDGVKEAKESQHRWRSGWEENKHTKQPEDSHTK
SGPPRHKPHGTPTRPGTPRNQKIRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEISQ
EDFLNMAHQIKHFFQYQEEKQQRSENWDESGDFSMKKPSIPRPHDTMDAAELSYYEHKSK
LRKTQVNHRVTGEEGHETPDDVGEPRPGEKLGGRSGGHPYGRPGERRSKEREEVRTPLAP
MVEEYNHGKEFPKLKGLRFRRRDRPGDSSEREWTSPLTERQLYDDEHKSGYDAPRRYGPA
DTRRQDGPSPVSGGRRNSPGPASLEAPPPRFERERLSPLHQKDSADMSPVPRFESPNSEH
SDEGPLDAPVPHLTSLKGPPRGGPLSGVRHSDSPGHTPPHEGGHPPSRYSGPGHMGPSRP
HRPGWYEGGGPGRFEEPQFEGSHHPGPGRFEGPVHHNMAERTEGSGPCEGPRMAMRGGGD
GPFDGPPQGPSRFGGPVGQQQSVRFEGQMGGPGHLEGPMQRFDGPGPFNNMGPGPMGFQQ
QRPLRFEGPTNQIGPMRFDAPSRFEGPGPGPRFDLPGGPHQAGPHQPGPPRFDYAPGQQG
PPRFPPQHNIQLPMQPMAPPLYDGPMGPQQSFGMAPQRFPEPMNPQFTPGPNMLPAANFN
MQPVPFSQPGPGPYYNPAAPAISMQQPGSMMGNLNQPYLPQNPVPFGQQAAQVAPAENHF
GQLDVNDLLSKLIFNGIIKPPSQAESSQTTSEASSTTTAPTPAVEEEEEEDPEVEEDEDL
PDLTSFSIDSMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVA
SKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRAT
KDQVGESCEICQEPFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKKTSSYLDATPSP
SRLLAEHPLGAFVKTEEEEAETSCQVTSCQIKQEVEADITVSGQEEPDSEAPADSARSED
TA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctgctacgtggtaatgctattggtccggctgctgtagcttggttcggg
tgtcggagctggaagatggaggaccagacggcccgggaagacgcctgcagggagtaccag
tcctcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctcaccatcctg
gccgaagagaacatccagttcgccaaggatatcgtggctattattgaagctcaaatcagc
aaggcgccggccgctgagaagctcccagttttgtacttagtggactccatagtgaagaac
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcgcttcatttatttgtgtc
tttgaaaaggtggatgagaacaccaggaagagcctgttcaagcttcgctccacctgggac
gacgtctttccgctcaagaagctctatgccctggacgtccgggtcaactctctggacacg
gcctggcctatcaagccgctgccgcacaacttcaactccacctccagcatccatgtcaat
cccaggttcctcaagcagcctgaggaaaaggcccaaacgcaatcggtcccagccaagccg
gcgccggtggccccagcccctccaccaccacccctggcggtcccccagacagccccagcc
gggctgacccaggagcagctgatccggcagcagctgctggccaaacagaagcagctgctg
gagctgcaacagaagaagatcgagctggagctggagcagacgaaggcccagctggcagga
cagggtggcctggtgctgccaccacctattgggtcagttccggccgaggcaagcccgtct
cagagaccgggtcagcaggttcctccaccaatccggccctggatccccccacagtctcct
gccgaccccaagctgtccaccagagacccccgtttgaaccgcagcggacctcccaccgca
ccccagccggctgccaagcggcagagcccgcacccccccggggcgtcggcggcccctgtc
gagaagagggcaccagagaaacccccccggcaggaaaaaaatcggcccccaaggaaggac
ccaccagaggagaagctgaagtccaagtctccatctccgctggccagaggcctacagagc
aggagcaaacaggcagaggcggagacacccaaacccgccgaggcccctaggaaggaccct
cggctgaagaagcgtctgtcggagaagccagctgaggccaaggacgacgacgtgaaggaa
aagaagcgctgcgtggacaagaaggagcgggacgatgcgccgcggagagccgagccaccc
aggtccaacaagaccaagcctctgaacggactggcgcccaaacatgaccatctggagccc
gccgacaagcccgacccaaagcctggcaccgccaccacccgcaggaagcgcacacattcc
cggtcccgctcacgatcacccaccagctcccccaagaggaaggaccgccgctcgcccaag
agccatgtccgcagcggctccctgtcgccatcccacaaggctgggaaacctcggagggtc
cgtggtgacgacaccccccacggcaagccaggccgagatgaccggcccggcgccaagaag
gcccagtcggacagcaggaggccaaaaaggctgcaggaggagcgccgctctgaatccagg
gactcccactccccacgaggtcacgacggggtcaaggaggccaaggagtcacagcatcgc
tggaggagtggctgggaggagaacaaacacacaaagcagcctgaggactcccacacaaag
tctggacccccccgacacaaaccccatggcaccccgacccggcctggcacccctaggaac
cagaagatccgtctcagcgttgacgccaacctacagattcctgaagtcctcaactctgcc
tccaagaaggacctgctgaggagggccagcaagcgtctggagagcggagagatttcccag
gaggacttcctgaacatggcacaccagatcaaacacttcttccagtaccaggaggagaag
cagcagcgctcggagaactgggacgagtccggagacttctccatgaagaagccgtccatt
ccccgcccccatgacacaatggacgcagctgagctgtcctactacgagcacaagtccaag
ctgaggaagactcaggtcaaccacagagtcacaggcgaggaaggccacgagactccagat
gacgttggggagccgagaccaggagagaaactgggaggacggagcggtggacacccgtac
ggacggccaggtgaacggaggagcaaggagcgagaggaggtgcggacccctctggccccc
atggtggaggagtacaaccacgggaaagagttccccaagctgaaggggctccgcttccgc
aggagggaccgccctggagattccagtgagcgggagtggacgtcgccactgacagagcga
cagctctacgatgacgagcacaagagtggctatgacgccccgcggagatacggccccgct
gacacacgccggcaggacgggccctcccccgtctctgggggccgcaggaactccccaggg
ccagccagtctggaggctccaccccctcgatttgagcgggagcgcctgtcgcctttacat
cagaaagactcagcagacatgagtccggttcctcgctttgaaagtcccaacagcgagcac
tctgacgaggggcccctggatgcccccgttcctcacctcaccagtctgaaggggcctccc
cgcggagggcctctgtctggggtccgacacagcgactccccagggcacacaccgccccat
gaaggaggacatcccccctcacgctacagtggccctgggcacatgggcccctccagaccg
caccgtcccggctggtatgaaggtggtggccccggccgtttcgaggagccgcagtttgag
ggctcccaccaccctggccccggcagattcgagggccctgtgcaccataatatggcagag
aggactgagggttccgggccctgtgaggggccccgcatggccatgagaggaggaggagat
gggccgtttgatgggcccccccagggccccagcaggtttggaggccctgtaggccagcag
cagtcggtcaggtttgagggacagatgggggggcctggtcacttggagggccccatgcag
cgtttcgatgggccggggcccttcaacaatatgggtcctggcccaatgggcttccagcaa
cagcggcccctccgctttgagggccccactaaccaaataggtccaatgagatttgacgcc
cccagtcgctttgagggccctggaccaggccccaggtttgatctgcctgggggcccccac
caagcgggacctcatcaacctgggcccccacgctttgactatgctcctggccagcagggt
ccgcccaggttccctccccagcacaacatccagctgcccatgcagccgatggccccgccc
ctctacgacggccccatgggcccccagcagagcttcggcatggccccccagcggttccca
gaacccatgaaccctcagttcacacccggccccaacatgctgccggcagcaaacttcaac
atgcagccggtcccgttcagccagccaggccccgggccctactacaaccctgcagctccc
gccatcagcatgcagcagccgggctccatgatggggaacctgaaccagccctacctgcct
cagaacccagtgcctttcggacagcaggctgctcaggtggctcctgcagagaaccacttt
ggtcagctggacgtcaacgaccttctgtccaagctcatcttcaacggcatcatcaagccg
ccgtcacaggctgagtcttcgcagaccaccagcgaggcatcgtccacgacaaccgccccg
actccagctgtggaggaggaggaagaggaggacccagaggtggaggaggacgaagacctg
ccggatctgaccagcttcagcatcgacagcatgaagcagcgctatgagagcgtggtgacc
aagctgtactcagggaaccagtgctgcctctgcagcatgcgcttcacagcggcgcagacc
gacctgtatgccgaccacctggactggcacttcaggcagaaccatgccggcaaggtcgcc
agcaagaaggtcacacaccgccgctggtactacagcctgacggactggatcgagtttgag
gagatcgccgacctggaggagcgcgcaaagagccagttctttgagaaggagaacgaggag
gaggtccagaagaaccaggcggccgccaaggagaaggagttccagagcgtccgcgccacc
aaggaccaagtgggagagtcgtgtgaaatctgccaggagccgtttgagacgtactgggtg
gaggaagaggaggactggttcctgaagaacgctgtcagagtggatgacaagaacttccac
ccggcctgcttcgaggactataagaagacgtcgtcctacctggacgcaacgccgtccccc
agtcggctgctggccgaacacccgctgggcgcattcgtcaagaccgaggaagaggaggct
gagacttcctgtcaggtcacttcctgtcagatcaaacaggaagtagaggctgacatcact
gtttctggtcaggaggaaccagactctgaggcgccggcagactcagcccggtccgaggac
acggcttga
DBGET
integrated database retrieval system
