Poecilia mexicana (shortfin molly): 106922733
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Entry
106922733 CDS
T08022
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03013
Nucleocytoplasmic transport
pmei03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106922733 (upf1)
03015 mRNA surveillance pathway
106922733 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106922733 (upf1)
Enzymes [BR:
pmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106922733 (upf1)
5.6.2.5 RNA 5'-3' helicase
106922733 (upf1)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106922733 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106922733 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
106922733
NCBI-ProteinID:
XP_014850880
Ensembl:
ENSPMEG00000016319
UniProt:
A0A3B3YS05
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVAKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGNGPNSQA
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcactgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgagggtcttcacaatggaggaatggatgattctgtggccaaaaccagccagttg
ttgggcgagctcaactttgaggaggatgaagaagacacttactacaccaaagatcttcca
atacacgcatgcagctactgcggtatccatgacccagcgtgtgtggtgtactgcaacacc
agtaagaagtggttctgcaacggccgtggtaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgactctgcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccggct
aaagccgactctgtggtggtgctgctctgcaggcagccgtgcgcgagccagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcggagcaggagcagctccgcgcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggtgctactttggaagac
ctggagaaacccggagtggatgaagaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatcttcggccctttggtcaaactggaggccgactacgacaaaaag
ctaaaagagtctcagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcaggtgatatgcggctgatgcag
ggcgacgagatctgcctgcgctacaaaggagacctggctcctctgtggaaaggcatcggt
cacgtcatcaaagtccccgacaactatggggatgaaattgccattgagctgcgcagcagc
gtcggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaact
tcctttgacaggatgcagagcgccctgaagacgtttgccgtcgatgaaacctccgtgtcc
ggttacatttaccacaaacttctgggtcacgaggttgaagacgtcaccatcaagtgccag
ctgccgaagcgcttcaccgctccgggcctgccggacctgaaccactcacaggtttacgct
gtgaagacggtgctgcagcggccgctcagtctcatccaggggccgcccggcaccggcaag
accgtcacctccgccacgatcgtgtaccacctgtcccggcaggggaatggaccagtcctg
gtgtgcgctcccagcaacatcgccgtggatcagctgacggagaagatcgacaagaccggc
ctgaaggtcgtcaggctgtgcgccaagagccgggaggccatcgagtctccggtctctttc
ctggcgctccacaaccagatcagcaacatggacagcatgccggagctccagaagctgcag
cagctgaaggatgagaccggagagctgtcgtccgctgacgagaagcgttaccgggccctg
aagcgcaccgccgagagggagctgctcatgaacgctgacgtgatttgctgcacctgcgtc
ggagccggagatccccgtctggccaagatgcagttccggtccatcctgatcgacgagagc
acccaggccaccgagccggagtgcatggtccccgtggtgctgggagcaaagcagctgatt
ctggtgggcgaccactgccagctgggtccggtggtgatgtgtaagaaagcggcgaaggcg
ggtttgtctcagtccctgttcgagcgactggtggtgctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccgtccaacatcttctacgag
ggctccctgcagaacggcgtcacagcagctgatcgcatcaagaaaggcttcgacttccag
tggccgcagccggacaaacccatgttcttctacgtgactcagggtcaggaggaaatcgcc
agttctggaacgtcatacctgaacaggacggaggcagcaaacgtggagaaaatcaccacc
aggttgctgaaggcgggagcgaaaccggaccagatcggcatcatcacgccgtacgagggc
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctgtac
cagcaagtggaaatcgccagtgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcctgcgttcgagccaacgagcatcagggcatcggcttcctgaacgacccgcggcgc
ctcaatgtggcgctgaccagagcaaagtacggcgtgatcatcgtggggaaccccaaggcg
ctgtccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctg
gtggagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaag
ctggtcaacaccatcaacccggggggacgtttcatgagcaccgccatgtacgacgcccgc
gaggcgctcatcccgggctccgcctacgaccgcagcagcgccgctggacgtccgtccaac
atgtacttccaaactcacgatcagatcgggatgatcggaaccgggccgggtcagatggcg
gccatgaacatccccatacccttcaacctggtgatgcccccgatgcctccgcccagctat
ctgggtcagaccaacggcccggctgcaggccgcggtgccatgaagggtaaacctggccgg
ggaggaaggcagcgggtccgcggctcggctcaccagggcaacgggcccaacagccaggcc
agccaggatggggcttcccagtccttctcccaggggccgctgactcagggttacatctcc
atgagccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggat
agctacctgggcgatgagttcaagtcccagatcgacgtggctctgtcccaggactccact
taccagggtgaacgtgcgtaccagcatggcggggtgaccggactgtcacagtactaa
DBGET
integrated database retrieval system
