Poecilia mexicana (shortfin molly): 106930723 Help Entry 106930723         CDS       T08022                                  Symbol lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pmei  Poecilia mexicana (shortfin molly) Pathway pmei03030   DNA replication pmei03410   Base excision repair pmei03420   Nucleotide excision repair pmei03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pmei00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     106930723 (lig1)    03410 Base excision repair     106930723 (lig1)    03420 Nucleotide excision repair     106930723 (lig1)    03430 Mismatch repair     106930723 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pmei03032]     106930723 (lig1)    03400 DNA repair and recombination proteins [BR:pmei03400]     106930723 (lig1) Enzymes [BR:pmei01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      106930723 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      106930723 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      106930723 (lig1) DNA replication proteins [BR:pmei03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     106930723 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      106930723 (lig1) DNA repair and recombination proteins [BR:pmei03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      106930723 (lig1)    NER (nucleotide excision repair)     Other NER factors      106930723 (lig1)    MMR (mismatch excision repair)     Other MMR factors      106930723 (lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  106930723 NCBI-ProteinID:  XP_014863946 Ensembl:  ENSPMEG00000013378 UniProt:  A0A3B3X8F9 LinkDB All DBs Position Unknown AA seq 1002 aa AA seqDB search MQRSIASFFQPRIKVKDSQKKTADEPVNKPIKSPLKVQNGVQEADSPIKKVAKRSRQILD SDEDEAPLVKEQGDKGAPAKTEKTDDVSQAVPTPLSPTPAPSTPITLETPETSASSTSSG SPSSPSSTSTSRIVKRKTARKMFPKRKLDESESRKGESEVAEEQGQQNKRPRLESGVSSA ENTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEKEKKAE GAEKKNEAKEKTDDEKGPSVAKDKVFEKDTKDTGSPKSQMEEKKQKEAKEQKDKEPAKKT PISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSDEEQRDAKGGSASGETDYNPSRPNYH PVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC LNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMF QPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL AEQSVLAALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYD VIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA QIHILESGEVRIFSRNQEDNTSKYPDIISRLPKVKKDSVVSCVLDTEAVAWDREKKQIQP FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFL FARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG DTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKE HILAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGISLRFPR FLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY NT seq 3009 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagcatcgcatcgttttttcagcccaggatcaaggttaaagacagccagaag aaaactgcagatgaaccagtgaacaaacccatcaaaagccccttgaaggtgcagaacggc gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcctggac agcgacgaagacgaggcgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa accgagaagacggacgatgtgtcccaggccgttcccaccccattgtctccaacgccggcc ccatccacacccataaccctggaaaccccggagacgtcggcctcctcgacgtcttcaggg tcgcccagttctcccagttccacctccacgtctagaattgtgaaacgcaaaactgcgagg aagatgttccccaagaggaagctggatgagagcgagagtcggaaaggggagtcggaggtc gcggaggagcagggtcagcaaaacaaacgaccccgcctggagagcggtgtcagcagtgca gagaacaccgatgaacccatggaggagggagcaaaggaagaaaaggttgaaaagccagtg gctgaggctaacagcccagacgaggaggtggggaacgagaaaacagaaggagagaaggcc aagaaggaggaggagcaggtagaagaaaagatctctgatgagaaagaaaagaaagctgag ggggcggaaaagaaaaatgaagcaaaggaaaagacggatgatgagaaagggccctctgtc gccaaagacaaggtgtttgaaaaggacacgaaagacacagggagcccaaaaagtcaaatg gaagaaaaaaagcagaaagaggcgaaggagcagaaagataaggagccggccaagaaaacc ccaatcagcagtttctttgctcccagaaaagcagcagttaagacagagaaaccagagaag aacgaaggagagaaaaagacgagtgcagagaggaagagctccgatgaggaacagagagat gcaaaaggtggatcagcctcaggagagacagactacaatccatccagaccaaactaccat ccggtggaccacgcctgctggaaacaaggccaaaaagtgccgtacttggcagtggctcgc acctttgagaaaattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaac ctgctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgt ctgaaccagctcggccccgcctaccttgggatggagctcggcgtcggggagacggtgctg atgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggaggcgcag gagaaaggagatttgggcctggtggccgagagttcccgtagcaaccagcgcaccatgttc cagccggccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgccagcatg agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgc cgcttctccgaggcccgctacatagtcaggtccctagctgggaagctgaggattggcctc gctgagcagagtgtcctcgccgcgctgagccaggccgtctgcttgaccccgcctggacaa ggtttccctcctgctgtgattgatgcagggaagggcatgagtgctgagagcaggcgggcc tggatcgaagagaagagcctcattctgaaacaaacatactgtgaaatgccaaattatgac gtcatcatcccagttttactgaaagcaggcatcgaccagctgcccaaacactgcaaactc actccaggagtcccgctgaggcccatgttggctcaccccaccaagggtgtcggcgaggtg atgaagaggtttgacgaggcggcgttcacctgcgagtacaaatatgatggagagcgtgca cagatccacattctggagagcggcgaagttcggattttcagccgcaaccaggaagacaac accagcaaatacccagatatcatctcgcgcctccccaaggtgaagaaggactctgtagtg tcttgtgttctggacacggaggcggtggcctgggatcgagagaagaaacagatccaaccc ttccaagtcctcaccactcgtaagagaaaggatgtggacgcctccgagatcaaagtccaa gtgtgtgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcgacagccg ctgtgtcggcgtcgggagctgctgagagagagcttcacagaggtggagggagagtttctg ttcgcccgttccatcgactctcacgacactgacgccatcgcagagttcctggagcagtcc gtccgagactcctgcgagggcctgatggtgaagactctggagaaggatgcgacctacgag attgccaaacgttctcacaattggctcaagttaaagaaggactacctggacggtgtgggc gacacggtggacctctgcgtgatcggtgcctacctgggaaagggaaaacgaacaggcacc tacggaggcttcctgctggcctgctacgatgaagacaatgaggagtttcagtcagtctgc aagatcgggacaggctttaaggatgaagatctggagcagcattacaagtttttaaaggag cacatcctggccaagccccgcccctactaccgcgtggaccaatcagccgagcccgacgtg tggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcgcccgtc tacaaggctgccatgggaatggtggatgcagagaaaggcatttctctccggttccctcgc ttccttcgcatcagagacgacaagaagcccgaggacgccaccaccggagctcagatcgct gatttgtacaagaagcagcagcagattcagaatcaaggggagaaagctgacccggaggac tactactga

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