Paramacrobiotus metropolitanus: 129588586
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Entry
129588586 CDS
T09028
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03013
Nucleocytoplasmic transport
pmeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129588586
03015 mRNA surveillance pathway
129588586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmeo03019
]
129588586
Enzymes [BR:
pmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129588586
5.6.2.5 RNA 5'-3' helicase
129588586
Messenger RNA biogenesis [BR:
pmeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129588586
mRNA cycle factors
Common to processing body (P body) and stress granule
129588586
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
AAA_19
AAA_30
DEAD
ResIII
nSTAND3
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
129588586
NCBI-ProteinID:
XP_055338864
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MNGPKCDYCSYNKPEGLVRCVDCLRYFCNGTFYGPLQVTGKASRSHAVQHASHVKHVSFL
FYGPTVSGPAWDIQKCCARPNCQQDNIFELGAVGDRSVPGGLGIVCRSHAGAENLINRHL
WNPLVSSKGKTFAAINPALCPWDEIVAHSSAQTPWGLDSGEKWDVGFCRLLEEYNLLFGK
KKRKKAHFQEWRKSVLSGSSRVPTSQVNYVNHFTHLVQTLDDIEGALVLNLPPLHVAEIL
QSVYTQFKIKVPFGIYRDLLSNGCPINLLNDAGAVMLGFIAHVSEDHWGNILDIDPARGE
KNRLQQFGVPVALKIAYYGVPSKRMKRALKLFPSAAALQAPLRHLLLNQPGQPNRCHEDE
IEVFGDPYPNQWQIHAAELALTNRLTLIQGPPGTGKTETAALVIFNFYRFLQKGEQILCC
APSNHATDQLLLAIARRVPEGTKIVRLLARSKVYKGVPGVSQFTVRGLKGFPPGKRVSHG
KYRNWELQCVRDADIICVTCNSAAMDVLQNRKFPYVLIDECNQALEPDSLIPITKGCNQL
VLVGDGQQLGPVVKYQCLERTSLGTSLFARLSSYPQFQPGSDGQIMLREQYRMHSEIGKM
ISDISYRGLLEHSASNADRKLPRLEYVSGLNDNGAHPLLFVDVWHNDELSAGGDSYLNNK
EAHIVTRIVANLLAKGKSSMFGPQLKPEQIGIVTFYRGQTRILLEEMRRHPELARDNNVD
KIEINSIDGFQGREKDVIILSCVRSGGSGTFQQRAGFVDDPHRLNVSMSRAKCWLIAVGD
YSVFSNKKVCDNWPKYLEYFRKSALHRRSAAPPRGNLDSVLQLPIRCGDTTGTCQFCQDT
Y
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaccaaaatgcgattattgttcgtacaacaaacccgagggacttgtgcgctgc
gtggattgcttgcgatacttctgcaatggaaccttttatgggcctctgcaagttacagga
aaagcgagcagaagtcacgctgtacagcatgcatcgcatgttaagcatgtgtcgttcctc
ttttacggaccgactgtatctggaccggcgtgggatattcagaaatgctgtgcacgaccg
aattgccaacaagacaatatcttcgaactgggagcggttggggatcgctccgttccaggt
ggactggggattgtctgccgatcgcatgccggtgcggagaacttgattaatcgccatttg
tggaatcccctggtatcgtctaagggtaaaacgtttgcggccattaacccggcactgtgt
ccgtgggatgaaatcgtagcgcactcctctgctcaaactccatgggggctggattccggc
gagaaatgggatgttggattttgtcggctgctggaggagtacaatcttctgtttggcaaa
aagaagcgcaagaaggcacattttcaggaatggaggaaaagcgttttaagtggatcgtct
cgagtgcctacttcgcaggtgaattatgtcaatcactttacacatttggtgcagactttg
gacgacatcgagggcgcactcgtcctcaatcttccgccattgcatgtcgcggagatttta
cagtccgtttatactcagttcaagatcaaagtgccgttcggaatatacagagatctgttg
tctaacggatgtccgataaatctgctgaacgatgcgggtgccgtgatgctggggtttatc
gcccatgtgtccgaggatcattggggaaacattttggatatcgatcccgcgcgaggagag
aagaatcgactgcagcagtttggagttccggtggcactaaagattgcttattacggcgtt
ccttcgaagcgaatgaagcgtgcgctgaagcttttcccaagtgctgctgcactgcaggcc
ccgctgcgtcatttgctgttaaatcagcccgggcaaccaaaccgatgccacgaagacgaa
atcgaagtatttggagatccgtatccgaatcaatggcaaattcatgccgctgaattggct
ttgactaaccgtctgacgcttattcaaggcccaccggggaccggaaagaccgaaacggct
gcgcttgtcatattcaacttttaccggtttttgcagaagggcgagcagattttgtgctgc
gcgccaagtaatcatgccacagatcaattgttactagccattgcccgccgcgtgccggaa
gggacgaaaattgtccgattactggctcggtcaaaagtgtacaaaggagtgccgggtgtt
tcgcaattcactgtccgaggtttgaagggttttcccccagggaaacgtgtatctcacggc
aagtatcgaaactgggagttgcagtgcgtgcgcgacgcggatatcatttgtgtgacctgc
aatagtgccgcgatggatgttctgcaaaatcgcaaatttccgtatgttctcatcgacgaa
tgcaaccaggctctggaaccggactcgttaattcccattacgaaaggatgtaaccagctt
gtcctggttggtgatggtcagcaactgggacctgtggtgaaatatcagtgtctggagcgt
acttctctgggaacatccctgtttgcgcgactctcgtcctatccgcaatttcagccgggt
agtgacggtcagatcatgttaagggaacaataccgcatgcactccgaaattgggaagatg
atttctgatatttcctatcgtggcttgttggaacacagtgccagcaatgctgacagaaaa
ttaccccggttggaatacgtgagcggtctaaatgataacggcgcgcatccgttgttattt
gtggatgtgtggcataacgacgagctttccgccggtggagattcctatttgaacaacaag
gaagctcacatcgttactcgtatcgtggcaaacctcttggctaaaggcaagtcttccatg
tttgggccgcagctgaagccggagcagattggcattgtgacgttctaccgcggacagaca
cggattcttctggaggaaatgcgacgccacccggaattagctcgcgataataatgttgat
aaaatcgagatcaacagcatcgatggatttcagggacgcgagaaagacgttataattctt
tcatgtgttcgctcgggtggctccggaacatttcaacaacgcgcgggattcgtggatgat
ccacaccgtctgaatgtgtccatgtcgcgcgccaaatgttggttgattgccgttggcgat
tacagtgtcttttccaataagaaggtttgcgataactggccgaagtatttggaatatttc
cgtaaatctgcactgcaccgtcgatcggctgcacctccgcgaggcaacttggattcggtg
ttgcagctgccaattagatgtggtgatactaccgggacttgccaattctgtcaggatact
tactaa
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