Phototrophicus methaneseepsis: G4Y79_10475
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Entry
G4Y79_10475 CDS
T07940
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmet
Phototrophicus methaneseepsis
Pathway
pmet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G4Y79_10475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmet03400
]
G4Y79_10475 (mfd)
Enzymes [BR:
pmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G4Y79_10475 (mfd)
DNA repair and recombination proteins [BR:
pmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G4Y79_10475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPC84773
UniProt:
A0A7S8EDJ9
LinkDB
All DBs
Position
complement(2448755..2452291)
Genome browser
AA seq
1178 aa
AA seq
DB search
MPYDQNVASGNVMQLTGLIERLRTSTVYQQLLADLQQKSAHHRPIIRSARPYVLGALARD
WQGPIIYLTARGRRVHTVAEQLPVWVDGEAQIHRFAEPTPMFYDRLAWDRAVIRERLSTL
HALLDDSETTPPIVIASARALMQRTLPPHQFRKHSQHIRVGQRYRLDALVEDWVHHGYEP
VTMVVEPGTFTRRGGLLDIYPVNASAPVRLDFFDDEIDTLRLFDPATQRSTDHIDTITII
PAREALPLSAPPLATHLAPWFSSLTRDDDDLHTAVQDADSLASGAAFGFLEHYLPYLVDA
PVSLLDYAPPDALIIVEDIDELRDVVQELEEEAAQNRENNIATQQIAPDHPLPYVDWETL
AADIDLRNVLHFSLNQPIEDLVQERWFTPGERFGGQLRNVLSYVRDRRQKEESIIVVTQQ
VDRVIELWQEQDTAFAPRLDTITEPIDQRNLVFVPGSLTEGWTFIASEHPLHLLTDAEVF
NWSRPEPRRRTTNQARRGKSPESDYNDWEQGDYVVHVDYGIGRFMGLRTRTVEGNEREYL
LIEYDGTDLLFVPIHQSDRLTRFIGPDEAPPKLNKLGKPDVWVKARGKAQKAAEEEAREL
LEIYARRASTSGHHYKPDTPWQHELEASFPYVETEDQLRVLREIKRDMESAMPMDRLVCG
DVGYGKTEVALRAAFKAVMDGRQVAILVPTTVLADQHYHTFSERMAPFPVRVEVISRFRT
KAEQNKIIDDLARGDVDIIIGTHRLLSEDIQLKNLGLIIIDEEQRFGVKHKEHFKKLRSE
VDILTLTATPIPRTLYMSLSGVRDISMIQTPPEERLPVVTHVGPFDPKLTRQAILRELDR
GGQVFIIHNRVRSIQAAKERFESIVPEASIVVAHGQMSGPLLEGVISAFSKGEYDILLAT
SIIENGIDMPNVNTLIVDRAEWFGVSQLYQIRGRVGRGAQQAYAYLFHAGGNRLTEEART
RLETMAEHSQLGAGFQIAVRDLELRGAGDILSTRQTGHVASVGLQLYTQLLQQAVSRLKG
EEDTGPKPTYEQERIIIDLPVPAYIPNDWIPEMALRLQLYRRIGSLQTQLDVDEMTQELS
DRFGALPPAVEGLLYQIRVKLLAQDINATSVIKPREHLLIKLPWLTAIDRQALSLELGED
VEVSRTAVELTFTPGIWRERLLDILESLKEGLPEQIGI
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccctatgatcaaaacgtagcttcagggaatgtcatgcagcttactggcctgatcgaa
cgtctgcgtaccagtacggtctatcaacagctcttagccgatctacaacagaaaagtgct
caccaccggcccattatccgcagcgcgcgcccttacgtgctgggtgcgctggcgcgcgat
tggcagggccctattatctacctgacggcacgcggacggcgtgttcatacggtagcggag
cagctccccgtctgggtagatggcgaagcacagatacaccgctttgcagagccaacgccc
atgttctatgatcgcctggcctgggatcgcgctgtgatccgtgagcgcttaagcacgctg
cacgccctccttgatgatagtgaaacaacaccgccgattgtcattgcgtcggcaagggcc
ttgatgcagcggacgctgccaccacatcaattccgcaagcacagccagcatatccgtgtc
gggcagcgttatcggctggatgcgctggtcgaagactgggtgcatcatggttacgaaccc
gtcactatggttgtggaaccgggcaccttcacacggcgcggcggcttgctcgatatttac
ccggtgaatgcatctgcacctgtgcggctggacttcttcgatgatgaaattgatacgctg
cgcttgttcgacccggccacacagcgttctacagatcatatcgacacaataacgatcatc
ccggccagagaggccctacccctgagtgcaccacccttggcgacgcacctggccccctgg
ttcagcagcctgacgcgtgatgacgatgatctgcataccgctgtacaagatgcggattcc
ctggcaagcggggcggctttcggcttcctggagcattatctgccttatctggtcgatgct
ccggtcagccttctcgattacgccccgccggatgcactcatcatcgtagaagatattgat
gaactgcgcgatgtggtgcaggaactggaagaagaagcggcccagaaccgcgagaataac
atcgccacgcagcagatcgcccctgatcacccactcccttatgtcgattgggagacctta
gcagcagatattgatctacgtaacgtgctgcacttcagcctgaaccagcccatagaggat
cttgttcaggagcgatggtttacgccgggtgagcgcttcggtgggcagttgcgcaacgtc
ttatcgtatgtgcgcgaccgccgccaaaaagaagagagcatcatcgttgtcacacaacaa
gttgaccgcgtcattgaattgtggcaggaacaagataccgccttcgcaccaaggctggac
accatcacagagcctatcgatcagcgcaatctggtctttgtgcccggttccctgacggaa
ggttggacatttatcgccagtgaacaccctctgcatctgctgacggatgctgaagtcttc
aactggtcccggccagagcctcgccgtaggacgaccaaccaagcacggcgtggtaaatcc
ccggaaagcgactataacgactgggaacagggcgattatgtcgtgcatgtggactacggc
atcgggcgatttatgggcctgcggacgcgcacggtcgaaggcaacgaacgcgaatatctg
ctaatcgaatacgatggcactgatttgctcttcgtaccgattcaccagtcggaccgtctc
acacgattcatcgggccggatgaagcaccgccgaagttgaataagctcggcaagccagac
gtatgggtcaaggcgcgtggtaaagcgcaaaaggccgccgaagaagaagcgcgcgaattg
ctggaaatctatgctcggcgggcgagtaccagcggccatcattataagccggatacaccc
tggcagcatgagctagaagcaagcttcccctatgtcgagacggaagaccaactgcgcgtg
ctgagagagatcaagcgcgatatggaaagcgccatgccaatggatcgcctcgtctgtggt
gatgtcggctatggcaagacggaagtcgccctacgagccgcctttaaggcggttatggat
ggccgacaagttgctatcctggtaccaacgaccgtcttagcagaccagcactatcacaca
tttagtgaacgtatggcccctttcccggtacgcgtagaggtgatttctcgcttccgcacc
aaggccgaacagaacaaaatcatcgatgacctggcgaggggcgatgtcgatatcatcatt
ggcacccatcgcctactgagcgaagacatccagcttaaaaacctggggctgattatcatc
gacgaagaacaacgattcggcgtgaagcacaaagagcacttcaagaaactgcgctcagaa
gtcgatattctgacgttgacagcaacccctatcccgcgcacgctgtatatgagcctctcc
ggcgtccgcgacattagcatgattcagacgccgccagaagaacgcttgcccgtggtgacg
cacgtcggccccttcgaccctaagctgacgcgtcaggctatcttaagagagttggatcgt
ggtgggcaggttttcatcattcataaccgcgtccggagcatccaggcagccaaagaacgc
ttcgaaagcatcgtaccagaggccagcatcgtcgtggcacacggccagatgagcgggcct
ctgctggaaggcgtcatcagcgcctttagtaagggcgaatacgatattctgctggcaaca
agcatcattgaaaatggcatcgacatgccgaacgtcaatacgctgattgtcgaccgtgct
gagtggttcggcgtctcgcagttgtatcagatacgcggacgcgtcgggcgtggggcacaa
caagcctatgcctacctgttccacgccggggggaaccgcctgacagaagaagcccgtacc
cgcctagagaccatggcggagcattctcaactgggggcaggcttccagattgctgtgcgc
gacctggaattacgcggtgcgggggacatcctcagcacgcgccagacggggcacgtcgcc
agcgtcggcttgcagctttatacacaactcctgcagcaggccgtcagccgactgaaaggc
gaagaagataccgggccgaagccgacatacgaacaggaacgcatcatcatcgacctgccc
gttccggcttatatccccaatgactggataccagagatggcactgcgcttgcagctttat
cgccgtattggcagcctgcaaacccaactcgatgtcgatgaaatgacgcaggagctcagc
gaccgtttcggcgcgctgccgcctgctgtcgagggcttactgtatcagatccgtgtgaag
ttgctggcacaggatatcaacgcaaccagcgtcatcaaaccgcgcgaacatctcctcatc
aagctgccctggctcacggcaattgaccgtcaagccctttcgctggagcttggcgaagat
gtcgaagtttctcgtacagccgttgaactgacgttcacaccaggtatctggcgtgaacgc
ctactagatatccttgaatcgcttaaagagggattgccggagcaaatcgggatataa
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