Phototrophicus methaneseepsis: G4Y79_11710
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Entry
G4Y79_11710 CDS
T07940
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmet
Phototrophicus methaneseepsis
Pathway
pmet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Y79_11710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmet03019
]
G4Y79_11710
Messenger RNA biogenesis [BR:
pmet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4Y79_11710
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QPC84999
UniProt:
A0A7S8EDK1
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All DBs
Position
complement(2718010..2719683)
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AA seq
557 aa
AA seq
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MAKAKLRVIPLGGCGEIGKNMTIIELGDDAIIIDTGIMFPANDMHGVDYIIPDFQYLRDR
KDLKIHGVIYTHGHEDHIGAVAHVLEAFPDVPLYASKLTASLINVKFANARRFNEARIEH
DPEVNIIYAGTNFNLGPFKIEPFRMTHSIPDCLGFAINTPYGLIVHTGDYKFDNNPVDGK
RPDYAKLAEFGKRGVKLLLADSTNSDKPGWTESESTIEPAFDKVFKEAKGRIMIATFASL
MSRVQQAADAAKKHGRRIAIAGHTMREYVQIAREIGYLDIPEELLIDIGKINSVEPHKLV
IMVTGSQGEPAAVLGKLAAGRHRYLDIRKNDTIVLSSHPIPGNEELVYRTINRLIQRGAN
LVYDSLENVHVSGHARQEEMRLLLNLVQPLFLVPVHGELRHLVEHKKLGIEAGIPENNII
VVENGTIIEVDTHYVRKGERIPGGYVFVDGRGVGDIGRAVIRDREILARDGFLIVSVNVD
KKTGKLVSQPDIVSRGFIYLREADNLLDQVRYTVESTLAENFSANGRRRDLIEESVGKLL
YNETRRRPMVFSIVNEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagcgaaactacgagtaatcccgctcgggggttgtggtgaaattggtaagaac
atgaccattatcgagctgggagacgatgccatcatcattgataccgggattatgttcccg
gctaacgatatgcatggcgttgactacattatccccgattttcagtatctacgcgatcgc
aaagacctcaaaattcatggggtaatctatacacacgggcacgaagatcacattggtgct
gttgcacacgttttggaagctttcccagacgtcccgttgtatgccagtaaactgacagcg
agcctcattaatgtgaagttcgccaatgcacgccgctttaacgaagcgcgaatcgaacat
gacccggaagtcaacatcatctacgccgggacgaactttaatctcggccctttcaagatt
gagccgttccgaatgacgcatagtatcccggattgcctgggctttgcgattaatacaccc
tatgggctgatcgtccatacaggcgactataaatttgacaacaacccggttgatggcaag
cgtccggattacgccaagcttgctgaattcggtaagcgcggcgtcaagctgctgctggcc
gatagcaccaactcagacaaacccggctggactgagtccgaaagcacgattgaacccgct
ttcgataaggtcttcaaagaggccaagggccgcatcatgatcgccacttttgcgtcgctg
atgtcgcgcgtgcagcaggccgctgatgcagccaaaaagcacggccgccgcatcgctatc
gcaggccacacaatgcgcgaatatgtgcagatcgcccgtgaaatcggctatctggatatt
cctgaagagttgctcatcgatattggcaagatcaatagcgtagagccgcataagctcgtg
attatggtaaccggttcccagggtgagccagccgccgtactgggcaagctagccgctggg
cgtcatcgctacctggatattcgtaagaatgacaccattgttctatcatcgcacccgatc
ccaggcaacgaagaactggtctatcgcaccatcaaccgcctgatccagcgcggtgcgaac
ttagtctacgattcactggaaaatgtccatgtcagtggtcacgctcgtcaggaagaaatg
cgcctgttgctcaacttggtgcagccgctgttcctggtgcccgtacatggcgaactacgc
catcttgtagagcacaagaagctgggtattgaagctggtatcccggaaaataacatcatc
gtcgtagaaaacgggaccattatcgaagtcgatacgcattatgtacgcaaaggtgagcgt
atccccggtggttatgtcttcgttgatggccgtggggttggcgacattggccgtgctgtc
atccgtgaccgtgaaattctggcgcgtgatggcttcctgattgtgtctgtaaatgtggat
aagaagacgggcaagctggtctcacaacccgatattgtctcacgcggctttatttatctg
agagaagcagataacctgctcgatcaggtccgttacaccgtagaatccacattggcagag
aacttcagcgctaatgggcgccgtagagacctcatcgaagagagcgttggcaagttgcta
tacaacgaaactcgccgccgcccgatggtctttagtatcgtcaacgaagtgtaa
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