Pseudoxanthomonas mexicana: H4W19_04035
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Entry
H4W19_04035 CDS
T06805
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmex
Pseudoxanthomonas mexicana
Pathway
pmex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H4W19_04035 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmex03400
]
H4W19_04035 (ligD)
Enzymes [BR:
pmex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H4W19_04035 (ligD)
DNA repair and recombination proteins [BR:
pmex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H4W19_04035 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QND80973
UniProt:
A0A7G6UPM6
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All DBs
Position
820462..823038
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AA seq
858 aa
AA seq
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MSLTDYRRKRSFDKTREPEPGKAAPKGRRPIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPSVKRMAVEVEDHPLDYASFEGDIPKGEYGGGHVAQFDHGVWSTDTDPEAQLVK
GHLRFELFGTKLKGGWHLVRSGKPAKQPQWLLFKDKDAYAGTLEADDLLADVTQAPAADL
KRAGSGKTAKKKLTALPSKKAPANAWAKKALKLTRAKKAPAPAGPFEPQLAKLGDAPPEG
EQWIHELKWDGYRILATIAKGQVRLWSRNALEWTDKIPDIRDAIAQLGLTSGALDGELIA
GSGTKEDFNLLQSTLSGERQGTLALALFDLLHVDGVDISAAPLIERKALLQAMLSDPPAH
LAFSSHIAGDGQSAYQLAGQRHFEGIISKRADRPYQGGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLAKPDPEHGWRYVGRVGTGFNDALMRQVTQQLAGAGGKKPTAYVGTT
DTDLRAATWFAPRFVVEVFFRGIGRQQLLRQPSLKAIRTDKDVEDLTRGDRIKANPKARA
SSKASATRATQAKTAKKAGKKAARKASDTALPTLSSPTKVLFPDSRITKQQVWDYYLAVA
DHLLPEIAGRPLSIIRCPAGIERPCFFQKHLTAGLERVETVKLKEESGNNADYLVVEDLP
GLMELVQFNALEFHPWGSHADAPDRADRVVFDLDPGPGVPFTEIKQAAVDIRKLLAQLEL
ESFLRVSGGKGLHVVVPLNPGCDWSLTKRFAHGFADALARSEPDRFVATATKVKRTKKIF
VDYLRNGRGATAVASYSMRARAGAPVAMPVAWSELSKLTKANAFTIDEVPAKLKRRRKDP
WEGIGAIKQNLARWADED
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccgactaccgtcgcaagcgcagcttcgacaagacgcgcgagccggagccg
ggcaaggctgcccccaagggccgacgaccgatcttcgtggtgcaacttcaccacgccagc
cggcggcactacgattttcgcctgcagatcggcgatgcgctcaagagctgggccgtgccc
aaagggcccagctatgacccctcggtcaagcgcatggcggtggaggtggaagaccatccg
ctggattacgcctccttcgaaggggacatcccgaagggcgagtacggcggcggccatgta
gcgcagttcgatcatggcgtctggagtaccgacaccgatccggaagcgcaattggtcaaa
gggcatctgcgctttgagttgttcggcaccaagctcaagggcggctggcatctggtgcgt
tcgggcaaaccggccaagcagccgcagtggctgctgttcaaggacaaggatgcctatgcc
ggcacgctggaagccgatgacctgctggccgatgtgacgcaggccccggcagcggatctg
aagcgggcaggctcgggcaagacggccaagaaaaaactcaccgcgttaccgtcgaaaaag
gcacctgcaaatgcctgggcaaaaaaggccctgaagctgacacgggccaagaaggcaccc
gcacctgcaggccccttcgagccgcagttggccaagctgggcgatgctccacctgaaggc
gagcagtggatccacgagctcaaatgggacggctatcgcatcctggcaaccatcgccaag
ggtcaggtgcgcctgtggtcgcgcaacgcgttggaatggaccgacaagattcctgacatc
cgcgatgccatcgcgcaactggggctgacctccggcgcactggatggcgaactcattgcc
gggtccggcaccaaggaagacttcaacctgctgcagtccacgctctcgggcgagcgacaa
ggcacgttggccctggccctgtttgatctgttacatgtggatggggtggatatctcagcg
gcgccgctgattgagcgcaaggccctgctgcaggcgatgctgtccgatccaccggcgcac
ctggccttctcctcccatatcgccggcgatggtcaaagcgcctaccaactggcggggcag
cggcactttgaaggcatcatctccaagcgcgcagaccgaccgtatcagggcgggcggagc
gaggactggcgcaagaccaagcagctggcctccgacgagttcgccgtggtcggctacacg
gcccctaaaggcagtcggaccgggtttggctcgttgctgttggccaagcccgatccggag
catggttggcgctacgtagggcgggtaggcaccggcttcaatgatgcgctgatgcgccag
gtcacccagcaactggccggggcagggggcaagaagcccaccgcctatgtgggcaccacc
gacaccgacctgcgagcggctacctggtttgcaccgcggttcgtggtggaggtgttcttt
cggggcatcggacgtcagcagttgctgcgtcaacccagcctcaaagccattcgcaccgac
aaggacgtcgaggacctgaccaggggggatcgcatcaaagccaatccaaaggcgcgagca
tcctcgaaggcctccgccacgcgcgccacgcaagccaagacggcgaagaaggcaggcaag
aaggcggcacgaaaagcgagcgacacggcgctgcccacgctctccagtcccaccaaagtg
ttgttcccggactcgcgtatcaccaagcagcaggtctgggattactacctggccgtggcc
gaccacctgctacctgagatcgcgggtcgtccgctatccatcattcgctgcccggcgggc
atcgagcggccgtgctttttccagaagcacctgaccgccggccttgagcgcgtggagacg
gtcaagctcaaggaggagtctggcaacaatgccgactatctggtggtggaggacctgccg
gggctcatggagttggtccaattcaatgcgctggagttccatccctggggctcgcacgcc
gatgcacctgatcgcgccgatcgggtggtgttcgatctggatccggggccgggcgtccca
tttaccgagatcaagcaggcagccgtggatatccgcaagttgctggcccagctggagctg
gagtcgttcctgcgggtctccggcggtaagggcttgcacgtagtggtaccgctcaatccc
ggctgcgattggtccttgaccaagcgctttgcccacggctttgccgatgcgctagcgcgc
tcagaaccggaccgcttcgtggccacggccacgaaagtcaaacgaaccaaaaagatcttc
gtggattacctgcgcaatgggcgaggggccacggccgtggcctcctattcgatgcgtgcc
cgtgccggggcgccggtggcgatgcccgtggcatggagcgagctgtccaaactgaccaag
gccaatgcgttcacgatcgatgaggtgccggcgaagttgaaacgacgccgcaaggatccc
tgggaagggatcggagctatcaagcaaaatctggcgcgatgggccgacgaggactga
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