KEGG   Pseudoxanthomonas mexicana: H4W19_04035
Entry
H4W19_04035       CDS       T06805                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmex  Pseudoxanthomonas mexicana
Pathway
pmex03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H4W19_04035 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmex03400]
    H4W19_04035 (ligD)
Enzymes [BR:pmex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H4W19_04035 (ligD)
DNA repair and recombination proteins [BR:pmex03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H4W19_04035 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QND80973
UniProt: A0A7G6UPM6
LinkDB
Position
820462..823038
AA seq 858 aa
MSLTDYRRKRSFDKTREPEPGKAAPKGRRPIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPSVKRMAVEVEDHPLDYASFEGDIPKGEYGGGHVAQFDHGVWSTDTDPEAQLVK
GHLRFELFGTKLKGGWHLVRSGKPAKQPQWLLFKDKDAYAGTLEADDLLADVTQAPAADL
KRAGSGKTAKKKLTALPSKKAPANAWAKKALKLTRAKKAPAPAGPFEPQLAKLGDAPPEG
EQWIHELKWDGYRILATIAKGQVRLWSRNALEWTDKIPDIRDAIAQLGLTSGALDGELIA
GSGTKEDFNLLQSTLSGERQGTLALALFDLLHVDGVDISAAPLIERKALLQAMLSDPPAH
LAFSSHIAGDGQSAYQLAGQRHFEGIISKRADRPYQGGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLAKPDPEHGWRYVGRVGTGFNDALMRQVTQQLAGAGGKKPTAYVGTT
DTDLRAATWFAPRFVVEVFFRGIGRQQLLRQPSLKAIRTDKDVEDLTRGDRIKANPKARA
SSKASATRATQAKTAKKAGKKAARKASDTALPTLSSPTKVLFPDSRITKQQVWDYYLAVA
DHLLPEIAGRPLSIIRCPAGIERPCFFQKHLTAGLERVETVKLKEESGNNADYLVVEDLP
GLMELVQFNALEFHPWGSHADAPDRADRVVFDLDPGPGVPFTEIKQAAVDIRKLLAQLEL
ESFLRVSGGKGLHVVVPLNPGCDWSLTKRFAHGFADALARSEPDRFVATATKVKRTKKIF
VDYLRNGRGATAVASYSMRARAGAPVAMPVAWSELSKLTKANAFTIDEVPAKLKRRRKDP
WEGIGAIKQNLARWADED
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgagcctgaccgactaccgtcgcaagcgcagcttcgacaagacgcgcgagccggagccg
ggcaaggctgcccccaagggccgacgaccgatcttcgtggtgcaacttcaccacgccagc
cggcggcactacgattttcgcctgcagatcggcgatgcgctcaagagctgggccgtgccc
aaagggcccagctatgacccctcggtcaagcgcatggcggtggaggtggaagaccatccg
ctggattacgcctccttcgaaggggacatcccgaagggcgagtacggcggcggccatgta
gcgcagttcgatcatggcgtctggagtaccgacaccgatccggaagcgcaattggtcaaa
gggcatctgcgctttgagttgttcggcaccaagctcaagggcggctggcatctggtgcgt
tcgggcaaaccggccaagcagccgcagtggctgctgttcaaggacaaggatgcctatgcc
ggcacgctggaagccgatgacctgctggccgatgtgacgcaggccccggcagcggatctg
aagcgggcaggctcgggcaagacggccaagaaaaaactcaccgcgttaccgtcgaaaaag
gcacctgcaaatgcctgggcaaaaaaggccctgaagctgacacgggccaagaaggcaccc
gcacctgcaggccccttcgagccgcagttggccaagctgggcgatgctccacctgaaggc
gagcagtggatccacgagctcaaatgggacggctatcgcatcctggcaaccatcgccaag
ggtcaggtgcgcctgtggtcgcgcaacgcgttggaatggaccgacaagattcctgacatc
cgcgatgccatcgcgcaactggggctgacctccggcgcactggatggcgaactcattgcc
gggtccggcaccaaggaagacttcaacctgctgcagtccacgctctcgggcgagcgacaa
ggcacgttggccctggccctgtttgatctgttacatgtggatggggtggatatctcagcg
gcgccgctgattgagcgcaaggccctgctgcaggcgatgctgtccgatccaccggcgcac
ctggccttctcctcccatatcgccggcgatggtcaaagcgcctaccaactggcggggcag
cggcactttgaaggcatcatctccaagcgcgcagaccgaccgtatcagggcgggcggagc
gaggactggcgcaagaccaagcagctggcctccgacgagttcgccgtggtcggctacacg
gcccctaaaggcagtcggaccgggtttggctcgttgctgttggccaagcccgatccggag
catggttggcgctacgtagggcgggtaggcaccggcttcaatgatgcgctgatgcgccag
gtcacccagcaactggccggggcagggggcaagaagcccaccgcctatgtgggcaccacc
gacaccgacctgcgagcggctacctggtttgcaccgcggttcgtggtggaggtgttcttt
cggggcatcggacgtcagcagttgctgcgtcaacccagcctcaaagccattcgcaccgac
aaggacgtcgaggacctgaccaggggggatcgcatcaaagccaatccaaaggcgcgagca
tcctcgaaggcctccgccacgcgcgccacgcaagccaagacggcgaagaaggcaggcaag
aaggcggcacgaaaagcgagcgacacggcgctgcccacgctctccagtcccaccaaagtg
ttgttcccggactcgcgtatcaccaagcagcaggtctgggattactacctggccgtggcc
gaccacctgctacctgagatcgcgggtcgtccgctatccatcattcgctgcccggcgggc
atcgagcggccgtgctttttccagaagcacctgaccgccggccttgagcgcgtggagacg
gtcaagctcaaggaggagtctggcaacaatgccgactatctggtggtggaggacctgccg
gggctcatggagttggtccaattcaatgcgctggagttccatccctggggctcgcacgcc
gatgcacctgatcgcgccgatcgggtggtgttcgatctggatccggggccgggcgtccca
tttaccgagatcaagcaggcagccgtggatatccgcaagttgctggcccagctggagctg
gagtcgttcctgcgggtctccggcggtaagggcttgcacgtagtggtaccgctcaatccc
ggctgcgattggtccttgaccaagcgctttgcccacggctttgccgatgcgctagcgcgc
tcagaaccggaccgcttcgtggccacggccacgaaagtcaaacgaaccaaaaagatcttc
gtggattacctgcgcaatgggcgaggggccacggccgtggcctcctattcgatgcgtgcc
cgtgccggggcgccggtggcgatgcccgtggcatggagcgagctgtccaaactgaccaag
gccaatgcgttcacgatcgatgaggtgccggcgaagttgaaacgacgccgcaaggatccc
tgggaagggatcggagctatcaagcaaaatctggcgcgatgggccgacgaggactga

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