Prochlorococcus marinus MIT 9303: P9303_09651
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Entry
P9303_09651 CDS
T00466
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmf
Prochlorococcus marinus MIT 9303
Pathway
pmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9303_09651 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmf03019
]
P9303_09651 (srmB)
03009 Ribosome biogenesis [BR:
pmf03009
]
P9303_09651 (srmB)
Enzymes [BR:
pmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P9303_09651 (srmB)
Messenger RNA biogenesis [BR:
pmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P9303_09651 (srmB)
Ribosome biogenesis [BR:
pmf03009
]
Prokaryotic type
rRNA helicases
P9303_09651 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
B12-binding
Flavi_DEAD
DEDD_Tnp_IS110
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABM77716
UniProt:
A2C8A6
LinkDB
All DBs
Position
877054..878964
Genome browser
AA seq
636 aa
AA seq
DB search
MGRCLPDLKDQSGRQRLFSMTHTKSHEDVSCSPEKSAPEISSTSSDDGLTTVAEATNQNN
SDDGSVAVAAEACEDIEATELVSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLG
RDLVGQAQTGTGKTAAFALPLIERLQDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPH
LKVLAVYGGADFRSQINTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLR
MGFIDDVEWILEQLPKERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQR
CITLQNSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQ
RERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSG
EAILFVNPRERRFVGGFERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSE
ETALLQELIQRVVEELSLSPEQLAVAALELAVGPGPILVQADEGWLQQSTQRSRRNDRHE
ISRGGSGRRPERSSRPPEDHMERFRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIF
ESHSLVDLPKGMPEDVFKDLKRLKVMNRELHIQRAS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggggcgttgtctgcctgatttaaaggatcaatcaggcagacaacgccttttctcgatg
acccatacaaaatcgcacgaggatgtctcgtgttcccctgagaagagtgcgcctgagatc
tcttcaacgagctcggatgatggtttaaccactgtggctgaggccaccaatcaaaacaat
tcagacgatggctcggtcgctgtagccgctgaggcctgtgaagatattgaagcgacagag
ttagtttccgaattcgattgttttggctttagcgagccgttgctcaaaacccttgcagaa
aagggttataagcaaccctctccaattcagaaagctgctattccagaattgatgctgggt
cgtgatctagttggtcaggctcagactggaacaggcaaaacagcagcttttgcgttgccc
ctgatcgagcggcttcaggatcatggcagtcgtccccaagtgttggtgctggccccgacc
cgggagttggcgatgcaggtcgcggattcgttccgtgcttatgccgttggccatccgcat
ctcaaagttttggcggtttatggcggagccgatttccgctctcagatcaatacgctgaag
cgtggagtggatgttgtggtaggtaccccgggccgcttgatggatcacatgcggcagggc
actctcgacacctctggtttgaggtgtttggtgcttgacgaagccgatgaaatgctgcgt
atgggcttcatcgatgatgtcgaatggatcctggagcagttgcctaaagaacgtcagatg
gtgctgttttcggcaacgatgccatcagagatccgtcgactttcgaagcgttacctacac
gaaccagcagagatcacgatcaagagccgtgatcaggaggctcgtctcatccgtcagcga
tgcatcactctccagaacagccacaaacttgaagcccttagaagggttcttgaggctttc
actggtgagggagtgattatttttgcccgcaccaaggtgatcactctcacagttgctgag
gcactggaatccgctggacacgatgttgccgtactgaatggggatgtccctcagaaccaa
cgggaacgaacggttgaacgtttgcgcaaaggcagcgtgaatatcttggttgctactgat
gttgccgctcgcggcctagatgtcgatcgcatcagcctggtgatcaactacgacatcccc
tttgatagcgaagcctatgtgcatcgcatcgggcgtaccggccgggctggccgcagtgga
gaggccattttgttcgtgaatcctagggaacgtcgctttgtgggcggctttgaacgtgct
gtaggtcaacccatcgaaccgatggatatccccaataatgcagcgattaaccagagtcgt
cttgatcgccttcgtcaacgcctcaccactgccgctaagacggagagagataactctgag
gagacagcccttctccaggagctaatccagcgtgttgttgaggagctcagcctcagtcca
gagcaattggctgtagcagcattagagcttgctgttggcccaggcccaatcttggtgcag
gctgatgagggctggttgcagcaatcaactcagcgcagccgccgcaacgatcgtcacgaa
attagtcgtggaggctctggccgaagacctgagcgttcatcgagaccgccggaagatcac
atggagcgctttcgtgtggaagtcggtcaccgcgatcgtgtcaagcctggcaatctggtt
ggtgccatcgccaatgaatccgggcttgaaggacggatgattggtcgcatccagattttt
gagtcgcacagtcttgtggatcttcccaaaggaatgcctgaggatgtttttaaagatcta
aaacgtctcaaggtgatgaatcgagagttgcatatccagcgcgcttcttaa
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