Prochlorococcus marinus MIT 9215: P9215_10621
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Entry
P9215_10621 CDS
T00598
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmh
Prochlorococcus marinus MIT 9215
Pathway
pmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9215_10621 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmh03400
]
P9215_10621 (mfd)
Enzymes [BR:
pmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9215_10621 (mfd)
DNA repair and recombination proteins [BR:
pmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9215_10621 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABV50677
CyanoBase:
P9215_10621
UniProt:
A8G4Z6
LinkDB
All DBs
Position
921828..925337
Genome browser
AA seq
1169 aa
AA seq
DB search
MSLNTLVNYISNSQITSELTKRISKNNELNVIGSSRYAKSIIIASIAKKEEKNILLICPN
VEIAYKWIGYFESINDKAVLYYPPTEHLPYASINKSKEIEFSQLTVLSKLIKKKKNELNI
IISTERSLQPHLINKNLLIENKLDLQKGVRIEIQELANKLTMLGYKKDNVTSTEGFWSRR
GEIIDIYPVNNEFPVRLEFFDNIIEKIREYDPHTQKTLESINNIEIIQAGVDLLIREKLN
NLSKNSFFNSEDINKNNLDRYLGIIEKKPSNIIDFLNKETILVIDELEDCKKFANNWFLD
SESNFDNCAYELNENLKNNYIKLEAKPNLHLKFDDILNSLGNFNLIKFYEFESKVNIDNR
FLLNDKRLNSYSKNIGKLSNDINKNIKNNEKVWILSAQPLRTRTLLFEHECNTNFLNNSN
DIDEAFKSISNSTPLILKNKNNYEIEGFYLPIWKVVLITDKELFSQQSLFNNVFIRRKQR
SVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISVAADQLG
SVNRYRSSGKIKPKINKLGGTEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDG
PWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAIT
SGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKIDLV
VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSL
SGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVN
KLKIMFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIED
SHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAM
KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVNDTQIDLPINAFI
PATWILNREEKLEAYKSATECSNNDELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK
CGFNKIKLKKPNIVIETKLKNSTFKILKNSLASSVQNKFNFNEGEQFSIITIRGLGATEI
QNQIDQLMLWFGSFEKEIKNFDKELLKKG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaatactttagtcaattatatttcgaactcacaaattacttctgaattaaca
aaaagaatttcaaaaaataatgaattaaatgttattggttcaagtagatatgcaaaatca
ataatcatagcaagcatcgcaaaaaaagaggaaaaaaatatattattaatctgtcctaat
gtagaaattgcttacaaatggataggttattttgaaagtataaatgataaagcagtttta
tattatcctccaacagaacatttaccatacgcatcaattaataaatccaaggaaatcgaa
tttagtcagcttacagttttatccaaattaataaaaaaaaagaaaaatgaacttaatata
attatatcaacggagagatcattacaacctcatctaataaataaaaacttattaattgaa
aacaagttagatttgcaaaaaggggttcgaatcgagattcaagaattagcaaataaactt
actatgctgggttataaaaaggataatgtaacttcaacagaaggattctggagtagaaga
ggggaaataatagatatctatcctgtcaataatgagtttcctgtaagattagaatttttt
gataatataattgagaaaataagagaatatgatcctcatacacagaaaacattagaaagt
atcaataatattgaaataatacaggctggagttgatttgctaataagagaaaagttaaat
aatttatctaagaacagtttttttaattcagaagatattaataaaaataatcttgatcgt
tatttaggaataattgaaaaaaaaccctcaaatataatagattttttaaataaggaaaca
attcttgtaattgatgaattagaagattgtaaaaaatttgcaaataattggtttctagat
tcagaaagtaattttgataattgtgcgtatgaattaaatgagaaccttaaaaataattac
attaagttagaggccaaaccaaatttgcatttaaagtttgacgatatattaaattcacta
ggaaattttaatttaataaaattttatgaatttgaatctaaagtcaatattgataatagg
tttttgttaaacgataaaagattaaattcatactctaaaaatataggaaaattatccaat
gatataaataaaaatataaaaaataatgaaaaagtatggatattatcagcacagccattg
agaactaggactttactttttgagcacgaatgtaatacaaacttcttaaataactctaat
gatattgatgaagcatttaagtcaattagtaattcaactcctttaattttgaaaaacaag
aataattatgaaatcgaaggcttttatcttccgatatggaaagttgtcctaataacagat
aaagaattattttcacaacaatctctctttaataatgtattcataagaagaaaacaaaga
agtgtcaattcaaatataaatgtaaataagattagtcccggtgattttatagttcataaa
aatcatggaataggaaaatttttaaaaatagaaaaaataaatataactggtgattcaagg
gattatttagttattcagtatcaggatgggaagataagtgttgctgctgatcaacttggt
agtgttaatagatatagatcaagcggaaaaataaagccaaaaataaataaattaggaggg
acagaatgggaaagaataaaagataaaaataagaaacaaatcaaaaaagttgctgtcgat
attttaaaactttatgctaagagagaaaaattaaaggggtacatttacccagaagatggt
ccttggcaagatgaattagaggaatcattcccttatcaaccaacacctgatcaaattact
gctgtagaagaaataaaatctgatatggaaagcgataagccaatggataggctagtttgt
ggagatgtaggatttggtaaaacagaagttgctgttcgggctatttttaaggctattaca
tcaggcaaacaggtaatattactagcacctacaacaatcctggctcagcaacattggaga
acaataaataatagattttcaccttacccaataaaagtatcattactcaatagatttaaa
accgttaatgaaagaaaggaaatctatgcaggtttgaaaaataacaaaattgatttagtt
gtagcaacccaccaaattttaggaaaagaaatagaaattaaaaacttaggactacttgtt
attgatgaagaacaaagatttggagtaaggcaaaaggagaaaattaaaaaaatcaaaaca
aacatagacgttttaactctctcggcaactccaattcctagaactctttatatgagctta
tctggactaagacaaatgagcttactaaatactcctcctccatcaagaagatcaataaaa
acatatttatctgaaatagatatggatgttataagaactgcgattaatcaagaacttgac
aggggggggcaaattttttatgttcttccaagaatttctgatattgatcaagctgtaaac
aaattaaaaattatgtttcccagcttaaaatttattgttgctcatgggcaaatgaacgaa
acagatcttgaaaatgcaatgattgcttttaataatggagaagtagatctaatgatatgc
acaacgataattgaaagtggattagacatccctaaagtaaatacaattattattgaagat
tcccataaatttggtctttcacaactttatcaacttagaggaagagttggtagaagcggt
gtacaagcacatgcttggttattttatccaaatataaataaaattaatgacgctgcaaaa
caaagattgaaggcgataaaagatttttcagaactaggaagtggataccaacttgcaatg
aaagatatggaaataagaggtgttggtagtttactaggagaagaacaaagtggaaaggtt
aatgctattggatatgatttatatatagaaatgctccatgaggctatttcagaaatcagt
gggcaggaaatacctgaagttaacgacacccaaattgatctgccaataaatgcatttatc
cctgcaacatggatattaaatagagaggagaagcttgaggcttacaaatctgctactgaa
tgttcaaataatgatgaattaactgaattagcaacagactgggtaaatagatatggaaat
ttaccaaaacctgttgagtccttaatcatgataatgagactaaaattactagctaaaaaa
tgtggttttaataagatcaagctaaaaaagccaaacatcgtgatagagacaaaattaaaa
aattctacttttaaaattcttaaaaattccttggcaagtagtgttcaaaataaatttaat
tttaatgaaggcgaacaattttcaatcatcactataaggggtttaggtgcaactgaaatt
caaaatcaaattgatcaactaatgttgtggttcggctcttttgaaaaagaaataaagaat
ttcgataaagaacttcttaaaaaaggataa
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