Parvimonas micra: NW74_04480
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Entry
NW74_04480 CDS
T03515
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmic
Parvimonas micra
Pathway
pmic03030
DNA replication
pmic03410
Base excision repair
pmic03420
Nucleotide excision repair
pmic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NW74_04480
03410 Base excision repair
NW74_04480
03420 Nucleotide excision repair
NW74_04480
03430 Mismatch repair
NW74_04480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmic03032
]
NW74_04480
03400 DNA repair and recombination proteins [BR:
pmic03400
]
NW74_04480
Enzymes [BR:
pmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NW74_04480
DNA replication proteins [BR:
pmic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NW74_04480
DNA repair and recombination proteins [BR:
pmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NW74_04480
NER (nucleotide excision repair)
GGR (global genome repair) factors
NW74_04480
MMR (mismatch excision repair)
DNA ligase
NW74_04480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NW74_04480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
HNOB
HHH_3
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIZ36641
UniProt:
A0A0B4S248
LinkDB
All DBs
Position
complement(958137..960119)
Genome browser
AA seq
660 aa
AA seq
DB search
MDKMKEIVEKLNLWAYKYYTLDEPIVSDAEYDKLYDELLKLEKETGVILPNSPTQRVGGE
VLEKFEKHTHLRELYSLQKAQSFEELEDFHNRCLKLLNEYNSINNTKKILEYYVEYKFDG
LTINLTYDKGILISASTRGNGVYGEEVFEQVKTIKSIPLEIDYKGLVEIQGEAIMPLSAL
AKYNETAEVPLKNARNAAAGAIRNLDPKKTASRNLDAFIYNVGFKSDEQFKTQEEMISFL
KENKFKVNGYEKKCLNLKEIKDKIREIDVLRKKVDYLTDGVVIKVNDFELREFFGYTNKF
PRFAIAYKFEAEEYSTILKEVVWNVGRTGKVTPTAILEPVEIGDVTVQRATLNNYDDILR
KRVKINSRVLIRRSNDVIPEILGTMDGDNENEIEIKMPTHCPYCNSELIRDGVHFFCTNT
LACTPQLTSSLVHFSSKNAMNIEGLSEKTIELLFDKLGVDKVYKIYDLKYDELITLEKFK
DKKVNNLLNSIEESKNVNLENFIYALGIKNVGIKTAKDLAKKYKNLVNLRKATIEELLHI
NDIGEVVANSIFEFFNDEYSKDALDKLLEKGIEVIPYKEILKSEFTDKKIVITGTFKNYK
RKDLEDIFSQNGLIVQSAVAKSTDYLVVGEKAGSKLKKAQELGINIISEDELEIFLEKIR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatgaaagaaattgtagaaaaattaaatctttgggcatataagtattacact
ttagacgaacctattgtaagtgatgctgagtatgataaactctatgatgaacttcttaaa
ttagaaaaagaaacaggcgtaattttaccaaattctccaactcaaagagtaggtggagaa
gttttagaaaaatttgaaaaacatacacatttaagagagctttacagtttacaaaaggcc
caaagtttcgaagagctcgaggattttcataacagatgtttaaaacttttaaatgaatat
aattctataaacaatactaaaaagattttggaatattatgttgagtataaatttgatgga
cttacaattaatctaacttatgataaaggaattttaatttctgcatctactagaggaaat
ggagtatatggagaagaagtttttgaacaagtgaagacaataaaaagtattccgcttgaa
attgattataaaggtttagttgaaattcaaggagaagctattatgcctctctctgctctt
gcaaaatataacgagacggcagaagtacctttaaaaaatgccagaaatgctgcagcagga
gcgattagaaatcttgatcccaaaaagacagctagtagaaatttagatgcttttatttac
aatgttggctttaagtctgatgagcaatttaaaactcaagaagagatgatttcgttttta
aaagaaaataaatttaaagtaaatggatatgagaaaaaatgtcttaatctaaaagagata
aaagataaaataagagaaatagatgttttaagaaaaaaagttgattatttgacagatggt
gttgtaattaaagttaatgactttgaacttagagaattttttggatatactaataaattt
cctagatttgcaatagcttataaatttgaggcagaagaatatagtacaattttaaaagaa
gttgtgtggaatgtaggaagaacgggaaaagttactccaactgcaattttagaaccggtt
gaaataggagatgtaactgttcaaagagcaactttaaataattatgatgatattttaaga
aaaagagtaaaaattaattcgagagttttgataagacgttcaaatgatgttattcctgaa
attcttggaacgatggatggagataatgaaaatgagatagaaattaaaatgccaacacat
tgtccttattgtaatagtgaattaattagagatggagtacattttttctgcacaaataca
cttgcctgtactccacaattaacttcttcacttgttcatttttcaagtaaaaatgcaatg
aacattgaaggactgagcgaaaagactattgaattgttatttgataaattgggagttgat
aaggtatataaaatttatgatttaaaatatgatgaacttatcacattagaaaaatttaaa
gataagaaagttaataatttattaaactcaatagaggagagtaaaaatgtaaatttagaa
aactttatctatgcgcttggaattaaaaatgtagggattaaaactgcaaaagatttagct
aaaaaatataaaaatttagttaatttaagaaaagcaactattgaagaattgctgcatatt
aatgatattggagaggttgtagctaattctatttttgagttttttaatgatgaatatagc
aaagatgcattggataaattacttgaaaaaggaatagaagtaattccttataaagaaatt
ttaaaaagtgaatttactgataaaaaaatagtaattacaggaacttttaaaaattataaa
agaaaagatttagaagatattttttctcaaaatggacttatagttcaatctgcagttgct
aaatctactgactacttagtagtcggagaaaaggctggttcaaaattgaaaaaagcacaa
gagcttggaataaatataatatcagaagatgaacttgaaatatttttggagaagataaga
taa
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