Pseudomonas mendocina NK-01: MDS_2413 Help Entry MDS_2413          CDS       T01473                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism pmk  Pseudomonas mendocina NK-01 Pathway pmk03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:pmk00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     MDS_2413  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pmk03400]     MDS_2413 Enzymes [BR:pmk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      MDS_2413 DNA repair and recombination proteins [BR:pmk03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      MDS_2413 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  AEB58444 LinkDB All DBs Position 2635042..2637570 Genome browser AA seq 842 aa AA seqDB search MARAQSEYNRKRNFEQTSEPREQPRKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKS WAVPKGPSLDPTQKRLAVHVEDHPLDYASFEGSIAEGNYGAGDVIVWDHGIWQPQGDPAG AYQAGKLKFTLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQ SVISGALVGGPSKEAKRKESTKPAKSRKAQTEFPDSLAPQLATLAERPPEGDWLYEVKFD GYRILARMRGDEVRLLTRNGHDWTERLPQQATALAKLGLSDSWLDGEVVALNEQGLPDFQ QLQNAFDIGRSHDLIYYLFDAPFLNGEDMREVPLETRRGKLKTALGSTRRSPLRFSEAFT AHHRDIVESACAMSLEGVIGKRSGSLYVSRRSADWIKLKCRLRQEFVIVGYTKPQGSRSG FGALLLAVNEAGGLRYAGRVGTGFGEASLKALHEQLRKLGRDESPLERKLTAALARGVSW VEPQLVGEVEFAEWTREGIVRQASFIALRSDKPTAQIVREHPRAPGAAAKKQTKKAESSC KSSAKPVVAGVPISNPQRVIDPESGTTKLQLAQFYADIAEWLLPYLRKRPVSLVRAPDGV EGEQFFQKHAERLAIPNIKHLDPKLDPGHARLMEIDSVPALVGAAQMGCIEFHRWGATSD RIETPDHFVLDLDPDPALPWRSMLEATRLTLSVLDELGLQAFLKTSGGKGMHIIVPLARH AGWDTVKGFAKALAQFMARQLPERFTATSGPKNRVGKIFIDYLRNGRGASTVSAYSVRAR PGLPVSVPIARDELDGLRSAQQWTVANLQRRLDGLRQDPWAGYANRQRLTRAMWDRLGAE AP NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt atggccagagcgcagagcgaatacaaccgcaaacgcaatttcgagcagaccagcgaaccc cgcgaacaaccgcgcaagcgccgcagcaaggccggtgcattgcgtttcgtggtgcagaag cacgatgcgcgccgcctgcactacgactttcgcctggaactggacggcactctgaagagc tgggcggtgcccaaggggccgagcctggacccgacgcaaaagcgcctggcggtgcacgtc gaggatcacccgctggattacgccagcttcgagggcagcatcgccgaaggcaactatggc gccggcgatgtgatcgtctgggaccatggcatctggcagccgcagggcgacccggcgggt gcctaccaggccggcaagctcaagttcactctggtgggcgagaaactgtccggggactgg acgctggtgcgcactcgtctgcgcggcagtggcgacaaggagcagtggctactgatcaag gagcgcgacgacatcgcgcgccccagcgacgagtacgacatcgtcgaggcacagccacaa agcgtgatcagcggcgcgctggtgggaggcccaagcaaggaggccaagcgcaaggaatcg acgaaaccggcaaaaagtcgcaaggcccagacggagttccccgacagccttgcgccgcaa ctggcgaccctggccgagcgtccgcccgaaggcgactggctgtatgaggtgaagttcgac ggttaccgcatcctggcgcggatgcgcggcgatgaggtgcgtctgctcacccgcaatggc catgactggacggagcgcctgccgcaacaggccacggctctggccaagctgggcctgagc gacagctggctggacggagaggtcgtggcgctcaatgagcaaggcctgccggacttccag caactgcagaatgccttcgatatcggccgcagccacgatctcatctactacctgttcgat gcgccgtttctcaacggcgaagacatgcgcgaggtgcccctggagactcggcgcggcaaa ctcaagactgcattgggcagcacgcggcgcagcccgctgcgtttttcggaggcttttacc gcccatcacagggacatcgtcgagagcgcctgcgccatgtcgctggaaggcgtcatcggc aagcgctcgggcagcctttacgtgtcgcgccgcagcgcggactggatcaagctcaaatgc cgtctgcgccaggagttcgtcatcgtcggctacactaagccgcagggcagtcgcagcggc tttggcgcgctgctgttggcggtgaacgaggcgggcgggctgcgctatgccgggcgggtc ggcaccggcttcggggaagcctcgctcaaggccctgcatgagcagttgcgcaagctgggg cgagacgagtcgccactcgagcggaaactgaccgctgccctggcccgcggtgtgagctgg gttgagccgcaactggtcggcgaggtcgagttcgccgaatggacgcgtgaaggcatcgtg cgccaggccagcttcatcgccttgcgcagtgacaagccgacggcgcagatcgttcgtgag catccgcgtgcgccaggcgctgcagcgaagaaacagaccaagaaggccgaaagctcgtgc aagtcatccgccaagccggtggtggccggggtgccgatcagcaatccgcagcgggtgatc gacccggaaagcggcaccacgaaactgcagctcgctcagttctacgcggatatcgccgaa tggttgctaccgtacctgcgcaaacggccggtctcgctggtgcgggcgccggacggggta gagggggaacaattcttccagaagcatgccgagcgcctggcaatccccaacatcaagcat ctcgatcccaagctggatcccggccacgcgcgcctcatggaaatcgacagtgtgccagcc ctggtcggtgcagcgcagatgggctgcatcgagttccaccgctggggcgctaccagcgac cgcatcgaaacgcccgatcatttcgtgctcgatctcgacccggacccggcgctgccgtgg cgcagcatgctggaggcgacccggctgaccctgagcgtgctcgacgaactgggtctgcag gcatttctcaagaccagcggtggcaaaggcatgcacatcatcgtgccgcttgcccggcac gccggctgggatacggtcaagggcttcgccaaggccctggcgcagttcatggccaggcag ctacccgagcgattcaccgcgacgtcggggccgaagaatcgggtggggaaaatcttcatc gactatctgcgcaacggccgtggcgccagtacggtgtcggcctactcggtgcgcgcgcgg ccaggcctgccggtttcggtaccgatcgcccgggacgaactggacggcctgcgcagcgcc cagcaatggacggtcgccaatctgcagcgacgcctggacgggctgcgccaggacccctgg gccggctatgccaaccgccagcgcctgacccgcgcgatgtgggaccggctcggcgccgaa gcaccatga

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