Prochlorococcus marinus NATL2A: PMN2A_0360
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Entry
PMN2A_0360 CDS
T00267
Name
(GenBank) RNA binding S1:Cold shock protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmn
Prochlorococcus marinus NATL2A
Pathway
pmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMN2A_0360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmn03019
]
PMN2A_0360
03016 Transfer RNA biogenesis [BR:
pmn03016
]
PMN2A_0360
Enzymes [BR:
pmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PMN2A_0360
Messenger RNA biogenesis [BR:
pmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMN2A_0360
Transfer RNA biogenesis [BR:
pmn03016
]
Prokaryotic type
tRNA degradation factors
PMN2A_0360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
SnoaL_5
Motif
Other DBs
NCBI-ProteinID:
AAZ57852
UniProt:
Q46KX6
LinkDB
All DBs
Position
905494..907791
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AA seq
765 aa
AA seq
DB search
MTSVLKILESLDCVDGLEVSKLERSLKITKKIDKDNLNVAIKALTKLGIVQTIIDDKLTI
NNDRDFLRGRVRCSSKGYCFVVREDQGEDIYIREGNLNNAWHGDSVIVLITKQGVRRRAP
EGKIQCVLKRYNETLLAKVEPDKSTGELKAYPLDDRIPATIELEDEIETNKKYPDKDLIH
EIKITKYPIAQFNAKGSIVRELSINSGVEGDIELLLSKNYISKSLVAPKVAPKKISSKGR
SDLTAQPSLLFESWESTNSPSLPGLYAQPYEGGNRIWVHAPTISERINLGGKLDRYLRDK
GEVICLGNNWLEFLNESLRSASQFKINKECEAISLMIDINADGNITDWKFTLSIIKPVKI
ITPKHLIAINNRKATSKSVPIALKGIKDNLEVLYTLLHSAKIINNMNNISIKLDEYIPKL
ERLSELSKTFPGRDFNGWSKTYDCCDPQSLIDIYIRLSNNILSKHLIGYRLPFIYKEHEE
IDQSSINELTKSALALDKKITVNADGTITSSELIKSFESSTEKKILQKLVKHIIPGVNLK
LYEINTPEDISYLNYDAAQTNIESPWCCPSLNYWNIFNQFILTLLLSEGKNKPTSRSKQT
VELGKNDSWREVDWEIFPSKLKEIIASHSNLRLINNLNEIRKKSKSFRNNIISIAQGREA
QKIIGKEVTAIITGVQSYGFFAEIDDLTAEGLVHVSTLGDDWYEYRSRQNLLVGRKSKKT
YQLSQKINVRVLKVDILKNQIDLELVNDTETETINTINVESDNDD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagttctaaaaatactagaaagtcttgattgtgtggatggattagaagtttca
aaacttgagagatccttaaaaatcacaaaaaaaattgataaagataatttaaacgtagct
attaaagctcttacaaaactaggaatagtacaaactattattgacgataaactgacgata
aacaatgatagagattttttgcgaggtagggtgcgttgtagtagtaaaggctattgtttt
gttgttagagaagatcaaggtgaagatatttacataagagagggtaatttaaataatgcc
tggcatggcgattctgtaattgtattaataactaagcaaggagtaaggaggagagcacct
gaagggaaaatacaatgtgttttaaaaagatataatgaaactctgctggcaaaagttgaa
cctgacaagtccactggagaattaaaggcctaccctttagatgacagaataccagcaaca
attgaacttgaagatgagatagaaactaataagaaatatcctgataaagatttaattcat
gaaataaagataactaaatatccaattgctcaatttaatgctaagggttcaattgttaga
gaattatctattaattcaggagtggagggagatattgaattattactttctaagaattat
atatctaagagtttggtagcacctaaagttgctcccaagaagatttcctcaaaaggaaga
tcagatttaactgctcaaccttctttattatttgaaagttgggaatctactaattcacct
tctcttcctggattatatgcgcaaccctatgaagggggtaatagaatatgggttcatgcg
cctacgatctctgaaagaatcaatttaggcgggaagctagacagatatcttagagataaa
ggagaagtaatttgcctaggtaacaactggctagagtttcttaatgaatcacttagatca
gcatctcaatttaaaatcaataaggaatgcgaagctatttcattgatgatagatattaat
gccgatggcaatataactgattggaaattcacactcagtattattaagcctgtgaaaatc
attaccccaaaacaccttatagctatcaacaacagaaaggctacatctaagtcagttcct
atagcccttaaaggtattaaagacaatctagaagtcctttatactcttttacattcagct
aaaataataaataatatgaacaatatttctattaaattagatgagtatattcctaaatta
gagagattaagtgaattgtcaaaaacatttcctggcagggactttaacgggtggtctaaa
acttacgattgttgcgatccacaatctctaatagatatttatataagactttcaaataat
attctttcaaaacatttaataggctatagattaccatttatttataaagagcacgaagaa
attgatcaatcatctattaacgaattaactaaatcagcattggcattagataaaaaaata
accgttaatgctgatggaacaataacatctagtgaattaataaagtcattcgaatcaagt
actgaaaagaaaatacttcaaaagcttgttaaacatataattcctggtgttaatttaaaa
ctctacgagataaatacacctgaagacatttcgtatttaaattatgatgcagcacaaact
aatattgaatctccatggtgttgcccatctttaaactactggaatatatttaatcagttt
atattaactttacttttatctgaaggtaaaaataaacctacaagccgaagtaaacagact
gtcgaattaggaaaaaatgatagctggagagaagttgattgggaaatatttccatctaag
cttaaagaaattattgctagtcattcaaatttaagattaattaataatctaaatgaaatt
agaaaaaaatctaaatcatttagaaacaacatcatttcaattgctcagggtagagaggcg
cagaaaattataggtaaagaagtaacagctattataactggtgtacaaagctatggtttt
tttgctgagatagatgacttaactgctgaaggcttagtccatgtaagtactttgggtgac
gattggtacgaatatagatctaggcaaaaccttttagtaggtagaaaaagcaaaaaaaca
tatcaactttcacaaaaaatcaatgtcagagttttaaaagttgacattctaaaaaatcaa
attgacttggagcttgtaaacgatacagaaacagaaacaataaatactattaatgttgaa
tctgataatgatgattaa
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