Petrotoga mobilis: Pmob_1408
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Entry
Pmob_1408 CDS
T00621
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmo
Petrotoga mobilis
Pathway
pmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pmob_1408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmo03400
]
Pmob_1408
Enzymes [BR:
pmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pmob_1408
DNA repair and recombination proteins [BR:
pmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pmob_1408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SecA_DEAD
AAA_30
AAA_22
AAA_19
AAA_5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABX32111
UniProt:
A9BHZ6
LinkDB
All DBs
Position
1511747..1514671
Genome browser
AA seq
974 aa
AA seq
DB search
MIRKELINFLDSLKKVNKQKILVLPDGYLQDFDDEEEVFIYPDFDIFPFENLDISPNIKA
KRMKTLHALLTKENVTVLTTFSSLIRYTLPKNEFVSKKIKVGDTFDLDHNVPYHLGYNLS
EEVTSPGEYSKRGFVRDFFIPIYEQPVRIELWDEVIDRISFFDSYSQRSIENLKEVEIIP
GSEIMKFDHNLEFYEERLKKYLNGTNEEEFLTLDQFNTLPGIFYKDKNTIFSYLNEDGDI
YLINKEEIINSYSEKEKENYEMCDTELKRKIYKMFSGHNLEILNKIKYEEVKLTLEKIYF
IKSKKEDKRLEYIPLLDWEDLNDGDLVVHEDYGIGIYHGVNKVETLLGLREFVTLEYSDN
SRVYVPVGRLDKLSKYIGDPESVKISSLNSKSWKNTKQKVKEEIKQKIEELQKIYALREN
QRGIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEV
AMRAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKEKKDLFE
SIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLMMSAT
PIPRTLYMSISGLRDISTISTPPVGRLPIQTFIGKYSDKLVRTAILREKSRGGQVIYIHN
RVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDLLLSTTIIENGIDI
PNVNTLILDDPERYGISQLYQIKGRVGRSNRRAFVYFLFKKEVTPQTKKRLEAIKQYNEP
GSGLKLALRDLEIRGYGDILGIEQKGHINAIGYHLYHEMLNKILFEYGIKKEEEIQKPQT
YTEIKGIKGSLVIPESYISNSIERMRIYRRISVAKTVDDVEDIRSEIRDKYGKFPEEVER
LFQYALIKVKANMEGIKEIEIGDTYISFKFENDVNPVIEKYNKYSRKITFYPETKELISY
GPKDHMKYMEKVFS
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
ttgattagaaaagaacttataaattttctagattcgctaaaaaaagttaacaaacaaaaa
attttagttttacctgatggatatctccaagattttgacgatgaggaagaggttttcatt
tatccagattttgacatatttccatttgaaaatctggatatctctccaaatatcaaagca
aagagaatgaaaacgttacatgccttattaacgaaagagaacgtgaccgttttaactacc
ttttcatccttaataaggtacaccttgcctaaaaacgaatttgtaagcaaaaagatcaaa
gttggagatacgttcgatcttgatcataacgttccttaccatttaggatacaatctttca
gaagaagtaactagtcccggagaatattctaaaagaggttttgtcagagactttttcatt
ccaatttacgaacaaccggttagaatagagttatgggatgaagtaatagatagaatatcc
ttttttgattcttattcccaaaggtctattgaaaatttaaaagaagttgagataattcca
ggatctgaaattatgaaatttgatcacaacttagaattttatgaggagagattaaaaaaa
tatcttaatgggacaaatgaagaagagtttctgactctcgaccaattcaatacccttccg
ggaatcttttacaaagataaaaacacaatatttagttatcttaatgaagatggagatatt
tatttaatcaacaaagaagaaatcataaactcttactctgaaaaagaaaaagaaaattat
gaaatgtgtgacactgaactaaaacgaaaaatatataaaatgttttctggacataacctt
gaaattttaaacaaaataaaatatgaagaagttaaacttaccttagaaaagatttatttt
ataaaatccaaaaaggaagataaaaggttagagtatatacctcttcttgattgggaagat
ctaaacgatggggacttggtagtacacgaagattatgggataggaatataccatggtgtt
aacaaagttgagactcttttgggtttgagagagtttgtaacattagaatactccgataat
tcaagggtatatgtcccagtaggtaggttagacaaactatctaaatacatcggagaccca
gaatccgttaaaatatcttctttgaacagtaaaagctggaaaaatacaaagcaaaaggta
aaagaagagattaaacaaaagatagaagagcttcaaaagatctatgccttaagggaaaat
caaagaggaatacaactatttggagatcctgaattggaagaaaaattcaaagaaaccttt
ccttacgtcgaaacacctgaccaagaaaaaagtatcaaagaggttatgagagatctagaa
agtgaaagaccgatggatagattgttgtcaggtgattcgggatttggtaaaactgaagtt
gcaatgagagcagctttcagaacggttgtttcaaattaccaagtgctattattagctcct
acaacgatacttgccaagcagcattacgaaaatttcaaacaaagaatggactcttttgga
attaagatagctttagttacccgtcataaaactcaaaaagaaaagaaagacctctttgaa
agtataggaaaaggtcaagtagatatagtaatagggacgcacgccttattatcagattta
ttgcaggtaaaaaacctgggattagttatagtagacgaagaacaaagatttggtgtactt
cagaaagagaaattcaaaaagttaagtgatggagtaaacttccttatgatgagcgccact
cctatacctagaaccttatacatgtctatcagcggcttaagagacatctccacgatatcg
acgccgcctgtgggtaggttacccattcaaacatttattgggaaatactcagataagtta
gtacgcacggctattttgagagaaaaatctaggggtggacaagtaatctatattcacaac
agagttcaggaattgaatgaactgcataaaaaattgcgaacacttattccagaaataaag
atagcaatggttcatggcgggacaccaaaaaaggagtttataaaatctataaacgatttg
tatgatggaaatattgatctccttctttcgacaacaataatagaaaatggaatagatata
cccaatgtcaatacccttatcctagatgacccagaaaggtatgggatctctcagttgtat
caaattaaaggaagagttggaagatctaacagaagagcttttgtctactttctatttaaa
aaagaagttacccctcaaaccaaaaaaaggctggaagcaatcaaacagtacaatgaacca
ggaagtggattaaagcttgctttgagagatttagaaattcgtggatacggggatatattg
ggaatagagcaaaaaggtcatattaacgcgataggctatcatctataccatgaaatgttg
aataaaattttatttgaatatggcattaaaaaggaagaagaaattcaaaaacctcaaact
tacacagagataaaaggtataaaaggttccctagttattccagaatcatatatttctaat
tctattgaaagaatgagaatatatagaagaatatcggtggctaaaacagttgatgatgtt
gaggatataaggtctgaaatacgcgataaatacggtaaatttccagaagaagttgagaga
ttgtttcagtacgctttgataaaagttaaagccaatatggaaggcattaaagagatagaa
ataggagatacttacatatcttttaaattcgaaaatgatgtaaatcctgtcattgaaaag
tacaacaaatattcaagaaagattaccttttatccagaaacgaaagaactcattagttat
gggccaaaagatcatatgaaatatatggaaaaggttttttcttaa
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