Passer montanus (Eurasian tree sparrow): 120499017
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Entry
120499017 CDS
T07277
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03013
Nucleocytoplasmic transport
pmoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120499017 (UPF1)
03015 mRNA surveillance pathway
120499017 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoa03019
]
120499017 (UPF1)
Enzymes [BR:
pmoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120499017 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120499017 (UPF1)
Messenger RNA biogenesis [BR:
pmoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120499017 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120499017 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120499017
NCBI-ProteinID:
XP_039558321
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MEQILLAQWVNGPDGILQNGAVDESVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCG
IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG
CRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPS
EQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFG
PLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYK
GDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQ
SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ
RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL
CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAER
ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC
QLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNG
VTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG
AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA
NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLN
NLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHD
QIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNR
FGIPGSSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggagcagatcctgcttgcacagtgggtgaacggccctgatgggatcctgcagaacgga
gctgtggatgagagcgtggccaagaccagccagctcctggcagagctcaacttcgaggag
gatgaggaggacacttactacaccaaggacctccccgtgcacgcctgcagctactgtggg
atccacgaccctgcctgtgtggtttactgcaacaccagcaagaaatggttctgcaacggc
cgtgggaacacctctggcagccacattgtgaaccacctggtgagagccaagtgcaaggag
gtgaccctgcacaaggacgggcccctgggagagaccgtgctggagtgctacaactgcggc
tgccgcaacgtcttcctgctgggcttcatcccagccaaggctgactccgtggtggtcctg
ctgtgcaggcagccgtgtgccagccagagcagcctgaaggacatcaactgggacagctcc
cagtggcagcccctgatccaggaccgctgcttcctctcgtggctggtgaagatcccctcg
gagcaggagcagctccgcgcccgccagatcacagcccagcagatcaacaaactggaggag
ctctggaaggaaaatccatctgcaaccctcgaggacttggaaaaacctggtgttgatgag
gaaccccagcatgtcctgcttagatatgaagatgcttatcaataccaaaatatatttggt
cctctggtcaagcttgaggcagattatgacaagaaactcaaggaatctcagacccaagat
aacatcacagtcaggtgggacctgggcttgaacaagaagagaattgcttatttcactttg
ccaaagactgattcagacatgcgcctcatgcaaggagatgagatctgcctgaggtacaag
ggagacctggcccccctctggaagggaattgggcacgtgatcaaagttcctgacagttct
acagattatggtgatgagatagccatcgagctgaggagcagcgtgggagctcccgtggag
gtcactcacaacttccaggtggattttgtctggaaatccacttcctttgacaggatgcag
agtgccctgaaaacatttgcagtggatgagacctcagtgtctgggtacatttaccacaaa
ctgctgggccacgaggtggaagatgtcatcatcaaatgccagctgccaaaacgcttcaca
gcccaggggctccctgatctcaaccactctcaggtttatgctgtcaagaccgtcctgcag
cgtcctctgagccttatccagggtccccctggcactgggaaaacagtgacatcagccacc
atcgtgtatcacctggccaggcagggcaatgggcctgtgctggtgtgtgcccccagcaac
atcgctgtggaccagctgaccgagaagatccaccagactggcctcaaggtggttcgcctg
tgtgccaagagccgcgaggccatcgactcgcccgtgtccttcctggccctgcacaaccag
atcaggaacatggacagcatgccagagcttcagaagctgcagcagctcaaggatgagact
ggagaactttcctctgctgatgagaagcgttaccgggcgctgaagcgcacggcagagcgg
gagctgctcatgaacgctgatgtgatctgctgcacgtgtgtgggagctggggacccccgg
ctggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggccaccgagccc
gagtgcatggtgcccgtggtgctgggggcaaagcagctgatcctggtgggtgaccactgc
cagctggggcccgtggtgatgtgcaagaaggcagccaaggcggggctgtcgcagtcgctg
ttcgagcggctggtggtgctgggcatccggcccatccggctgcaggtgcagtaccgcatg
caccccgcgctcagcgccttcccctccaacatcttctacgagggctcgctgcagaacggc
gtcacggcagctgacagggtgaagaaaggctttgatttccagtggccccagcctgacaag
cccatgttcttctacgtgacccaggggcaggaggagattgccagctcgggcacctcttac
ctgaacaggacggaggctgccaacgtggagaagatcaccaccaagctgctcaaggctggg
gccaagcctgaccagattggcatcatcaccccctacgagggccagcgctcctacctggtg
cagtacatgcagttcagtggctccctgcacaccaagctctaccaggaagtggaaattgcg
agcgtggacgccttccagggcagggagaaggatttcatcatcctgtcctgtgtgagggcc
aacgagcaccagggcattggcttcctcaacgaccccaggaggctcaacgtggccctgaca
agagccaggtacggggtgatcatcgtggggaaccccaaggccctgtccaagcagcccctc
tggaatcacctcctcaattactacaaggagcagaaggtgctggtggaggggcccctgaac
aacctgcgcgagagcctcatgcagttcagcaagccccgcaagctggtcaacaccatcaac
cctggagcccgtttcatgaccactgccatgtatgatgcacgggaggccatcatccctggc
tctgtctacgaccgcagcagccaagggcgcccatccaacatgtacttccagacccacgac
cagattgggatgatcagtgctggccccagccacgtcactgccatgaacattcccatcccc
ttcaacctcgtcatgccccccatgccccccccgggctacttcggccaggccaacggcccc
gctgcaggccgtggggctcccaaagggaagacgggccgaggcgggcgccagaaaaaccgc
tttgggattcctggcagcagccagtccaacctccccaacagccaggccagccaggacgtg
gtgtcccagcccttctcccagggccccctgacccagggctacatctccatgagccagccc
tcccagatgagtcagcctgggctctcccagccggaattatcccaggacagttaccttggt
gatgagtttaaatcccagattgacgtggcgctgtcacaggactcaacttaccagggggaa
cgagcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
