Passer montanus (Eurasian tree sparrow): 120505421
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Entry
120505421 CDS
T07277
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoa03019
]
120505421 (HELZ)
Messenger RNA biogenesis [BR:
pmoa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
120505421 (HELZ)
3'-5' decay
Other 3'-5' decay factors
120505421 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_7
AAA_16
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
120505421
NCBI-ProteinID:
XP_039571840
LinkDB
All DBs
Position
Unknown
AA seq
1944 aa
AA seq
DB search
MADRRPEKACEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHLPEPCQAELDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSLRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDLEEGSRDGWHFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGTYMETLIE
KWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGKMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANPSKQQQSPPKGKVHHHNQNDH
FPPDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNMVMSVPLPVPWTGYQGRFAVDPRLITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPV
SLGQQQLPHQDKEQHEQTRNGKSENTAGPEISKIRTPEKKPLESKQVDLEANPQQRSPES
RSSVAYPNAKFHRKDNPNPRQLNLHLTPPHSQFAVPSRHFQHLSQIPRQPYPLQQQQQQQ
NLLSQQQNHLPEQPNQMPPQQSQVVQQHNHLNQQPPPPSQLSPAFQAGPSQSFFNNPIPH
RPHSPAVDAVISEQHPPPLLQEVNNPLRPIAQHNPVLPTHLNNFIEENPSGMPLGDTLDR
MHGNVALETIRQQQQARLQQWNEHNAYLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVR
ANWKLASNTEDETEATYSRFQELLRELSQRDPSESRDGAEMPPPQSRLLQYRQVQPRSPP
ALPSPSCNSNHSAHFPNFTENSRDIELPTNPAFQQHLPQMYNPPFSMPSEHITPSPLKYL
QPDGSWTYANLQQNHLLGQGFHYGIPPLPHRSQQSPFIQIQNHQHAVGQEPFHPLASRAV
SASSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQDSLGQCKELQDHSNQSSFN
YSSPELWVNSSSSAPYPNIPCNGASRAVPPRELLAPPKAAKPPEEHLKAENIQLSNSFNY
NVLQHLGQFPPLMPNKQLVESNSSSPQPAGGTKPVMSYASALRAPPKPKPPPEQTKKNSD
PLSLFQELSLGSSSGSNGFYSYFK
NT seq
5835 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaaggcatgtgaacaagcatgtgaatcccttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggctctcctttccctcagccagtacccc
ccagctcacctcccggagccctgccaggcagaactcgaccgcatcaaaatcgagactctt
ctgtatagaattgcttcctttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggcgatggatctctccgggcagtgctgtgc
tgcatgcatctcaaagggaagctgcaaattgtgtctaatgttctttccaaatcactgatg
ggggaatcactgaacgggatggtaactaaagatctcacacgactgaaaacacttcttgct
gaaacagaggcagctggtaaagtaccatcaggatatcatgtagaagatttagaagaaggg
tcacgggatggttggcacttccgcccccctcccaggggcgtcaccagcagtgaggagtac
acactgtgtaaaagatttttagagcaagggatctgcaggtatggtgcccagtgtacttca
gcacattcccaggaagagctgacggaatggcagaagcgttacgcttcccgcttgatccgc
ttgaaacagcagaaggagaacaagcagtgctcaggcacttacatggaaaccctcatcgag
aaatggatgaattccttgtctcctgagaaagtgcttagtgaatgtgtagaaggagtgaga
gtagaacataatcccgagctctcagtaactgtcaccaccaaaaagtctcaccagacatgg
acatttgctctcacatgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgaccacactttagtatcgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggaggaaagatggtccagaatgga
atagatcactatatatacaaagtcagtatagcctttaacacagaaatctttgggactttt
cgccaaactgtggtgtttgactttggattagaaccagtcctcatgcaacgagtgatgatt
gatgctgcttcaactgaagaccttgaatacctgatgcatgcacggcagcagctcctgacc
acagccaagcgctgggattccacgtccaagactattgtggagtttgagcctaatgaaact
actgaactggagaagagccttctcaccagataccaaatccctctgtctgctgaccagctg
ttcacacaatctgtcctggacaaatcattgaccaagaccaactatcagtcacggctccat
gacctcctgtacattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggtgtttctggaggtgcaaaatat
gcccaaaatggacaactttttggccgctttaagctcactgagaccctctctgaagacact
ttggctggaaggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gaaaagtcagcacagacccaaggaaccaaagagaaggtttatgaagcagctatcgaggag
aagacaaaggattatatcttcttgagggtatccagggagtgctgtgaggagctgaacctt
cgggcagattgtgaaatgcaggttgagcttcagttccagttgaaccggttacccctctgt
gaaatgcattatgccttggacaggattaaggacaacagcattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacaggcagtgggacgagcagctggacccgcgg
ctgaacgcgaagcagaaggaggctgttctggccatcaccaccccgctctccatccagctg
ccccccgttcttatcatcggtccctatgggacaggaaaaaccttcactctggctcaggca
gtcaagcacatcctccagcagcaggacaccagcaggattctcatttgcacccattctaat
agtgctgctgacctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttccgaaatcgctgggtaaagactgttcacccagtt
gtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaa
gacattcttaagcaacgagtagtagttgttactttaaatacatcacaatacctatgtcag
ctggatcttgagccagggttttttacacacattctgttagatgaagctgctcaagctatg
gagtgtgaaacgattatgcctctagcattagctaataaaaacacaagaattgtcttggct
ggagaccatatgcagctcagtccttttgtctacagtgaatttgccagggagagaaacctt
catgtttccctgctcgaccggctctacgagcactaccctgccgagttcccgtgcaggatc
ctgctctgtgagaactatcgctcccatgaagcaatcatcaattacacatccgaacttttc
tatgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccctttg
actttcttcacagcacgtggagaagatgtgcaagaaaaaaatagtacagctttttacaat
aatgcagaggtgtttgaggtggtggagcgcgtggaggagctgaggaggaagtggccagtg
gcctggggcaagctggacgacggcagcatcggggtggtgaccccgtacgctgaccaggtg
ttccgcatccgcgccgagctgcgcaagaagcgcctgtccgacgtcagcgtggagagggtg
ctcaacgtgcagggaaaacagttcagagttttgttcctcagcacagtacgaacacggcac
acatgcaagcataagcaaactccaattaaaaggaaagagcagttactggaggattcaaca
gaagacttggattatggttttctgtctaattacaaacttctcaacactgccattacaaga
gcacaatccttggtagctgtggttggagatcctattgctttatgttccattggaagatgc
aggaaattctgggaaaggttcattgccctgtgccacgagaacgagagtcttcatggcatc
acatttgagcagatcaaagctcagctggaagctctggagttgaagaaaacctacgtgttg
aaccctctggcccccgagttcatcccgcgagcgctgcggcaccagcactccgccaacccc
agcaagcagcagcagtcacctccgaagggcaaggtccatcatcataaccagaatgaccat
ttcccacctgatggaattgttcagcccaatccttctgttctaattggaaatcctatccga
gcatatactcctccccctcctcctctgggacctcaccccaatctggggaaatctccaagt
cctgttcaaaggatagatccacacactgggacaagtattctatatgtacctgctgtctat
ggaggaaatatggtcatgtctgtgcctttgcctgtaccatggacggggtatcagggtagg
tttgcagtcgaccctcgcctcattactcaccaagcagccatggcatataacatgaacctg
ttacaggcacacgggcgagggtctccgatcccctatggcctgggccaccactcccctgtt
agcctgggacagcagcagctcccacaccaggacaaggagcagcacgaacaaactcgaaat
ggtaaaagtgaaaacactgctggacctgaaatcagtaaaattcgaacacctgagaagaaa
cctctggaatccaagcaggttgatttagaagcaaaccctcagcagagaagccccgagtcc
cgttccagtgttgcttaccccaatgctaaattccaccgcaaagacaaccccaaccccagg
cagctgaacctgcacctgaccccgccccactcccagttcgcagttcccagccgccacttc
cagcacctctcccagatcccgaggcagccgtaccctctgcagcagcagcagcagcagcaa
aacctcttaagccaacagcaaaatcacttgcctgaacagcccaaccaaatgccaccccag
cagagccaggtagttcagcagcataatcacttgaaccagcagcctccaccaccttcgcag
ctttcccctgctttccaggcaggccccagccagtccttttttaataatcccattccccac
cgaccacattctcctgctgtagatgctgtgatttcagaacaacaccccccacctctgtta
caagaagtcaataatcctttgaggcctattgcacagcacaacccagttctgccaacccac
ttgaacaacttcattgaagagaatccatcaggaatgcccttaggggacactttagatcgt
atgcatggaaatgtagctttggaaacaataaggcagcaacaacaagccaggttacagcaa
tggaatgaacataatgcctatctcagtcaaggcactattccatatcaacaccatcaccat
cctcatctaccacatcttcctcagcaaccaattggattacatcaacagcagcaagttagg
gcaaactggaaacttgccagtaatacagaagatgaaacagaggcaacatattcaagattc
caggagctgctccgggagctgtcgcagcgcgatcccagcgagagccgggacggcgccgaa
atgccgccgccccagtcgagactgttgcaatacagacaagtccagccccggagcccacca
gcactcccttctccttcctgcaactccaaccacagcgcccacttccccaacttcaccgag
aacagcagagacattgaactgcccactaacccagcatttcagcagcatttaccccaaatg
tacaacccccctttctcaatgccatccgaacacataaccccgtctcccttgaaatacctg
caacctgatgggtcctggacttacgctaacctgcagcagaatcacctcctggggcagggc
tttcactatggaatacctccactgccccacaggtcgcagcaaagcccttttatacaaatc
cagaatcatcagcacgcagtcggtcaggagccatttcatccactcgcatctcgagcagtt
tctgcttcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttg
taccaaagaagaatttcctctagttcagtccaggcttgttctgaagaattaagcactcct
caagacagtcttggtcagtgtaaagagcttcaggaccacagtaaccagtcatccttcaac
tactcctcccctgagctgtgggtgaactcctcctcctctgccccgtacccaaacattcca
tgcaacggagccagcagagccgttcccccccgggagctgctagctcccccgaaggcggcc
aagcccccggaggaacacctgaaggctgagaacatccagctctccaactccttcaactac
aacgtgctccagcatctgggccagttcccccctctgatgcccaacaagcagctggtggag
tccaacagcagcagcccccagcccgcgggcggcaccaaacccgtcatgtcctacgccagc
gctctgcgggctccccccaagcccaaacctcctcctgagcagacaaaaaagaacagcgac
cccctgtccttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttat
tcctattttaaataa
DBGET
integrated database retrieval system
