Passer montanus (Eurasian tree sparrow): 120510159
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Entry
120510159 CDS
T07277
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120510159 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoa03400
]
120510159 (LIG4)
Enzymes [BR:
pmoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120510159 (LIG4)
DNA repair and recombination proteins [BR:
pmoa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120510159 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
120510159
NCBI-ProteinID:
XP_039581595
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPVSQSPPKKTVASHVPFADLCSTLERIQKSKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLSLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRNKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPLDVIAELEECYWCNSCQLGIFRGSTIYVDCYAVVNEPQSKIPGTTLS
IRALELRFYGANVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVFELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcacagtctcctcctaagaaaacggtggcctctcatgtgcct
tttgctgatctctgttctactctggagcgaatacagaagtccaaatcccgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccacgatgcacttcatcag
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagctg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttagtttaccaaaagatggaaaagatgctgcaaagcttttaaattacaggacgcct
acgggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccgaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcgatt
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttacaactgatttggaaaaagtttgcaggcaactgcatgatccctctgtctcgctt
agtgatgtttctatcatgttattttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgagtaaccagacattctatatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgagggttcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcccgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaagagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtcatt
gatgctttaaatgaagccatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
agtggactgatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacaccccctccgaatgaa
aaaccgaccattttccactctatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcagaaacaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtacgatgaaccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgagctggaaagcagaatagcccagtgtggtggcagtgtggtacagaacccggggcca
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaagtatgatgtggtgagggcagaatggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagacgttgtgcagctcaag
gaagtgttctcaagaatgaaagacaataaggcaatgcctctggacgtgattgcagagcta
gaagaatgttactggtgtaacagttgtcagcttggtatattcagaggaagcactatttat
gtggactgttacgctgttgttaatgagccccaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaatgtcgtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatttgagctgtgggtgacacactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttag
DBGET
integrated database retrieval system
