Pseudomonas monsensis: HV782_011800
Help
Entry
HV782_011800 CDS
T07539
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmoe
Pseudomonas monsensis
Pathway
pmoe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HV782_011800 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoe03400
]
HV782_011800 (ligD)
Enzymes [BR:
pmoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HV782_011800 (ligD)
DNA repair and recombination proteins [BR:
pmoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HV782_011800 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QXI02629
LinkDB
All DBs
Position
2681656..2684307
Genome browser
AA seq
883 aa
AA seq
DB search
MTRNLDDYNRMRDFSATSEPAAVKRPGRKTAGNHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
QKAYAKGKLKFELQGEKLAGIWNLVRTHMPGKKENWFLIKHQDSAARPQEDYDVLVAEPD
SVLSERTIVGKPKLAAETSKTAKKTKTPSRKPTSATLGGAHKAKMPASLKPQLATLVDSA
PQGQWSYEIKFDGYRIMARIDGDQVQLFTRNGHDWTHKLPQQAAALAALGLESAWLDGEM
VVADEHGVPDFQALQNAFESGRSGNILYYLFDLPYLNGVDLREVPVEERRAALSTVLGAH
EQTLLRFSEAFDETPEALLNSACQMQMEGVIGKRLGSPYVSRRSGDWIKLKCKHRQEFVI
VGYTDPKGSRSAFGALLLGLHDRDRGELRYAGKVGTGFNETTLKTLLGQLKPLQVKKAAV
VNPPSGFEAKGVHWLKPKLLAEVAFAEMTQDGSVRHAVFHGLRDDKPAKDITEERAKPVK
TSRSKASDSKASDSKPSASKPSTSKKGAKKPATKSAASKAQTVPSQRDLANGKVRITHPD
RVIDAVSGTTKMQLAEYYASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPG
ITTLDKDVTGQPVMLINNAEALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDPALP
WKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHIAK
LLPDRFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPLFREEVAEIKG
GNQWNIHNIHERLAEVGDEPWADMKKTRQSITAQMRKRVGMHP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggaacctcgacgactacaaccgcatgcgcgatttctcggcgacctcggagcct
gccgccgtcaagcgcccgggacgcaaaaccgccggtaaccacgccttgcagttctgcatc
cagaagcacgacgcgtcgcacctgcattatgactttcgcctggaactcgacggtgcgctg
aaaagctgggcggtgcccaagggcccgtcactcgaccccaaggtcaagcgcctggcggtg
catgtcgaggatcacccgcttgattacgccaccttcgagggcagcattcccgaggggcac
tacggcgccggggatgtgattgtctgggatcgtggcgtgtggatcccgctggaagacccg
caaaaagcctacgccaaaggcaagctcaagttcgaactgcaaggcgagaaacttgccggg
atctggaatctggtgcgcacgcacatgccgggcaagaaagagaactggtttctgatcaag
catcaggacagtgccgcccgcccgcaggaggattatgacgtactggtcgccgagccggac
agcgtattgagtgagcggacaattgtcggcaaacccaaactggcggccgaaaccagcaaa
acggcgaaaaagactaagaccccatcacgcaagccgaccagcgccacgctcggcggggcg
cacaaggcgaaaatgcctgcttcgctcaaaccgcaactggcgacgctggtcgacagtgcg
ccgcagggccagtggagttacgagatcaagttcgacggttaccggatcatggcgcggatc
gacggtgaccaggtgcaactgttcacacgcaatggccatgactggacgcacaaactgccg
caacaggctgcggcgctggccgcgttgggtctcgaatcggcgtggctcgatggcgaaatg
gtcgttgccgatgaacacggcgtgccggatttccaggcgctgcaaaacgctttcgagagc
ggacgcagcggcaacattctttattacctgttcgatctgccgtatctcaacggcgtcgac
ctgcgcgaagtgccggtcgaggagcgccgcgcggccctgtccacagtgctcggtgcccat
gaacaaacgttgctgcggttctccgaggcgttcgatgaaaccccggaggcactgctcaac
agcgcctgccagatgcagatggagggcgtgatcggcaagcgcctcggctcgccttatgtg
tcccgccgcagcggcgactggatcaaactcaaatgcaaacaccggcaggaattcgtgatc
gtcggctacaccgatccgaaaggctcgcgcagtgctttcggcgccttgttgctgggcctg
catgaccgcgacaggggtgaactgcgctatgccggcaaggtcggcaccggtttcaacgag
accacgttgaaaaccctcctgggccagctcaaacccttgcaggtgaagaaagccgccgtg
gtcaatccaccgagcggtttcgaagccaagggcgtgcattggttgaaaccgaaattgctc
gccgaagtcgcgttcgccgaaatgacccaggacggttcggtgcgccacgcagtgttccat
ggcttgcgcgatgacaagccggccaaggacatcaccgaagagcgagcgaagcccgtgaag
acatccagaagcaaggcctccgacagcaaggcctccgacagcaagccttccgccagcaag
ccttccaccagcaaaaaaggcgcaaagaaaccggcaacaaaatccgctgcgagcaaggcg
caaaccgtgccgtcacaacgggacctggccaatggcaaggtgcgcatcactcacccggac
cgggtgatcgacgccgtcagcggcaccaccaagatgcaactggccgagtactacgccagc
gtcgccgaatggattctgccgcaactcaaggatcgcccggtggcgttggtgcgtgctccg
gatggtatcgccggcgaactgttcttccagaaaaatgccgagcggctggcgattcctggc
atcacaacgctggacaaggatgtcaccggtcagcccgtgatgttgatcaacaatgctgaa
gcgttgatcggcgcggtgcagatgagcacggtcgaactgcacacctggaatgccaccaca
gtcgatctggacaagcccgatcgcttcgtcctcgacctcgacccagacccggcgctgccg
tggaaaagcatggtcgaagccactgcgctgacgctaacagtgctcgatgagctgggcctc
aaggcctttctgaaaaccagtggcggcaagggtatccatctggtcgtaccgctgacccgt
aagctcggctgggacgaggtcaaggacttcagccacgcgatcgtcagccacatcgccaag
ctgttgccggatcgtttttcggcggtgtcagggccgaaaaaccgcgtcggacggatcttc
atcgactacctgcgcaacggtctgggggccaccaccatttgcgcctacgcggcgcgtacc
cgtgagggcttgccggtgtcggtgccgctgtttcgtgaggaggtcgccgagatcaagggc
ggcaaccagtggaacatccacaatattcacgagcgcctggctgaggtcggcgacgaaccc
tgggcagacatgaagaaaacccgtcagagcatcaccgcacagatgcgcaaacgggtcggc
atgcacccgtga
DBGET
integrated database retrieval system
