Pseudomonas mosselii: CLJ08_25305
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Entry
CLJ08_25305 CDS
T07806
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmol
Pseudomonas mosselii
Pathway
pmol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CLJ08_25305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmol03400
]
CLJ08_25305 (ligD)
Enzymes [BR:
pmol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CLJ08_25305 (ligD)
DNA repair and recombination proteins [BR:
pmol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CLJ08_25305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
SL4P
Motif
Other DBs
NCBI-ProteinID:
ATB67747
LinkDB
All DBs
Position
complement(5543549..5546008)
Genome browser
AA seq
819 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRAKPRSAHALQYCIQKHDASHLHYDLRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGVWEPEGDPHEA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVL
SDRTLPPRRPTASTRKRKAGHKSLPALLTPQLATLVDSPPSGDWRYEVKFDGYRILARID
GDDIRLFTRNGHDWSTKMPRQVEALKALGLDAAWLDGEMVVVDDNGVADFQALQNAFDTE
HDEHITYYLFDLPWLGDEDLRELPLQARRNTLAKLLDDNASPLLRYSADFKEPIDSLLDS
ACRLELEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLLALH
DRDSGQLRYAGKVGTGFSAATLDSILARLKPLQTTKSPLASPPTGAEARGVHWLKPQLLA
EVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQTRPEGLGNLRLTHPERV
VDATTGATKRQVAQYYAQVADRLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLQIPHVL
SYSKAQAGQAAMVINRADSLLGAVQMNTLELHTWNATNKDFDKPDRFVLDLDPDPALPWK
AMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMAGLF
PDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELAQLKGAN
QWNIGNLQARLAEVDYPWADMAKTRQSITLRMRKQLGIA
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaataccagcgcaagcgcgacttcaacgccacgcccgagccg
gctggcaagcgcgccaagccacgctcggcccacgcgctgcagtactgcatccagaaacat
gatgccagccacctgcactacgacttgcgcctggaactcgacggcaccctcaagagctgg
gcgatccccaagggcccctcgctcgaccccaaggttcggcgcctggcggtgcacgtggag
gatcacccgctggactatgccaacttcgaagggcacatccccgaaggccattacggcgcc
ggtgatgtgatcgtctgggaccggggtgtctgggagcccgagggcgatccgcatgaagcc
tatgccaagggcaagctgcgctttcgcctgcagggcgaaaaactatctggaatctggaac
ctgttccgcacccacctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
ggacaggcacgcagcgaaaccgactaccgcatcgtcgaagccctgccggacagcgtgctg
agcgaccgcaccctgccaccacggcgcccaaccgcttccacgcgcaagcgcaaggcaggt
cacaagtccctgccggcgcttcttacgccacaactggccacgttggtcgactccccgccc
agcggcgactggcgttacgaagtcaaattcgacggctaccggatcctggcgcgcatcgac
ggtgacgacatacgcctgttcacccgcaatggccacgactggagtacgaagatgccccgc
caggtcgaggcgctcaaggcgctggggctcgatgccgcatggctggacggcgagatggtg
gtggtcgacgacaacggcgtggccgatttccaggccttgcagaacgccttcgacaccgag
cacgacgaacacatcacctattacctgttcgacctgccctggctgggcgatgaggacctg
cgcgaactgccgctacaggcacgtcgcaacaccctggccaagctgctggatgacaacgcc
tcgccgctgctcaggtactccgccgatttcaaggagccgatcgattcgctactcgacagc
gcctgccggctggaactcgaggggctgatcggcaaacgtgccgacagcccctacgtcggc
cggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggaattcgtgatcgtc
ggctataccgacccaaagggtagccgccatggtttcggcgccctgctgctggccctgcac
gaccgcgacagcggccagctgcgctacgccggcaaggtcggcaccggcttcagcgccgcc
accctggacagcatcctcgctcgcctgaaaccgctgcagaccaccaagtcgcccttggcc
agcccccccaccggagccgaagcccgcggcgtgcattggctcaagccgcaactgctggcg
gaagtcgcctacgcccagatgacccgcgaaggcatcgtgcgccattcggtgttccacggt
ctgcgcgacgacaaacccgccaccgccatcgacctggagcgagcgatgcccgccaaacgc
gcagcacagacacgacccgagggcctgggcaacctgcgcctgacccaccccgagcgggtg
gtcgacgcgaccaccggggccaccaagcgccaggtcgcacagtactacgcccaggtcgcc
gaccggctgctgccgcagctcaaggatcgaccggtcgccctggtccgggcaccggatggc
ctgggcggcgagctgttcttccagaagaacgccggccaactgcaaattccccacgtgctc
agctacagcaaggcccaggccggccaggcggccatggtgatcaaccgcgccgacagcctg
ctgggcgcggtgcagatgaacacgcttgaattgcacacctggaatgccactaacaaggac
ttcgacaagcccgaccgcttcgtgctcgacctcgaccctgatcccgcactgccctggaaa
gccatgctcgaggccacccaactgaccctcaccctgctcgatgagctggggctgaaggtg
ttcctcaagaccagcggcggcaagggcatgcacctcgtcgtgccgttgacccggcgcgcc
ggctgggacgaagtgaaggacttcagccatgccttggtcgagcacatggccggcctgttc
cctgatcgcctcagcgccgtgtccgggccgaagaaccgggtcgggcggatcttcatcgac
tacctgcgcaatggcaagggcgccaccaccgtcgccgcctattcgctgcgcgcccgcgag
ggcctgccggtgtccgtgccgatctggcgcgaggaactggcccaactcaaaggcgcgaac
caatggaacatcggcaacctgcaggcccggcttgccgaggtggactatccgtgggccgac
atggccaaaacccgccagtcgatcaccttgcgtatgcgcaagcaactggggatcgcctga
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