Penaeus monodon (black tiger shrimp): 119570850
Help
Entry
119570850 CDS
T08784
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119570850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119570850
Enzymes [BR:
pmoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119570850
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119570850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
LIG3_BRCT
Enolase_N
Motif
Other DBs
NCBI-GeneID:
119570850
NCBI-ProteinID:
XP_037774360
EnsemblRapid:
LOC119570850
LinkDB
All DBs
Position
4:complement(23060277..23077562)
Genome browser
AA seq
885 aa
AA seq
DB search
MSDSKPIAAIIPWSQVCRMLDKVQTAVKAAKKEMLVKFIVQFRDLLKKKLEKAPQSTDSF
FPVLRILLPALDRARGAYGVKERKLAELYIRILGLKKEGNDAQKLLHFRKPKSEGGGETG
DFAEVAYYVLRSRCDDKGNMTLLDVDTHLTSIAENYAAKKHEEVERSLLIMLRKMTATEQ
KWLIRVLLKDMKLGIGQGTIFNAWHPDAKDYFDVNNSLEKVCKTLRDPTVRLHEIEVSLF
SAFRPMLAERAVLEKVEAQMDHKTYYAETKYDGERSQIHKNRNSYKYFSRNGFEFTNNFG
GDPNSGLFTPYLHGQFLPHVKDIILDGEMVGWSKKHGAIVSKGEHMDVKNLKEDGDLQVC
LVLFDIIYLNGQVLTNLPLSERLEKLRTVLIPLEGRIQFSAKVEVTTKEDVIRVLNDAID
NREEGIVLKNPDSIYSPASRKGGWIKVKPEYVDSLVSELDLLIIGAYYGSGRRKGVLSHF
LLGVAVPSNEVGGKPTEFHSFCRVGSGYTYAELGDLVAKLSPHARKGQAPPGVFVAREKP
DLWINPAKSCIVQVRAAEVVKSEMYKTGVTLRFPRVEKVRYDKPWYDTLTTKELDSLVKE
ASGKLATKHLLEVGDEPSPKRKALPKVEQISLPMHFRPADLSRVVKKDELFSGLEMCVMS
GDEDSTKQQLEKMVVEHGGSLTQHPGGNTYCIITDTRSVRVNNYIATSTYNVIRPSWVIT
CTAKCCLVPWGPLDAIHVMEKEKIRMQELFDKFGDSYYEPTDEKTVKRVMENMKQEDCIP
LTVEEMREFDEAMCEIDETRALFRPVTAVFIDGEGQELASLALRLHGGFVERSSSGVTHI
VVSDKEGGNCSLRPSEYQGQHLVTSKWVYDCIEKCKLLEERYYMP
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctaaacccattgcggcgatcataccctggtcgcaggtatgtcgcatgctg
gacaaagtacagacagctgtcaaggccgccaagaaggaaatgttggtcaagttcattgtg
cagtttcgtgatcttctcaaaaagaaactggaaaaggctccccaatctacagacagtttt
tttcctgtgcttcgcattctgctaccagctcttgacagagcccgaggagcctatggtgtc
aaggaacgtaaacttgcagaactttatattcgtatccttggtttgaagaaagagggcaat
gatgcacagaagcttctgcattttaggaagccaaaatcagaaggaggtggagagaccgga
gattttgcagaggtggcatactatgttctgaggagtcgctgtgatgacaagggcaacatg
actctcttggatgtcgacacgcatctgacttccattgctgaaaattatgcagcaaagaag
catgaggaagttgaaagatctctgctcataatgctaaggaaaatgacagcaacagagcaa
aagtggcttattcgcgttcttctgaaggacatgaaactaggcattggccagggtacaatc
ttcaatgcctggcaccctgatgctaaggactactttgatgtgaataacagcctggaaaaa
gtatgcaaaactctgcgagatcccactgttcgtctccatgagattgaggtgtccctcttt
tctgccttccgtcccatgctggctgaacgcgcagtgctggagaaagtggaggcacagatg
gaccataagacttactatgctgagaccaaatatgatggggaacggtcccagattcacaag
aatagaaattcctataagtacttctcacgaaatggctttgaattcaccaacaattttggt
ggtgacccaaacagtggcctttttacaccatacctccatggccaattcctcccccatgtg
aaagacatcatcctggatggagagatggtgggatggagcaagaaacatggtgctatcgtt
agcaaaggagaacatatggatgtcaagaatctaaaagaggatggggacttgcaggtttgt
cttgtcctcttcgacatcatatatctgaatggccaggtgttgactaatctgcccctatca
gagagacttgaaaagttgaggactgtgctcattccactagagggaaggatccagttctct
gccaaggtggaggtcacgacaaaggaagatgtcatcagagtcttgaatgatgccattgac
aatcgagaagaaggaattgttctgaagaacccagattccatttacagccctgcttcccgg
aaaggaggttggatcaaagtcaagccggagtatgtggactccttggtctcggaactggac
ctactgatcattggagcatattatggctcaggaaggcgcaaaggggtcctctctcatttt
ctgctgggtgttgctgtccccagtaatgaagttggaggaaaacccacagaattccactcc
ttctgccgtgtcgggtcaggttacacctatgctgaacttggtgaccttgtggccaagttg
tctccccatgccaggaaggggcaagctccccccggggtgtttgtggccagggagaagcca
gatctgtggattaatcctgcaaagtcatgcattgtgcaggttagagctgctgaggtagta
aaaagtgaaatgtacaaaactggagtgacactgagattccctcgtgtggagaaggttcgt
tatgacaagccatggtatgatacacttacaacaaaagaattggattcacttgtaaaggaa
gcaagtggtaagctagccacaaagcaccttttggaagtaggtgatgaaccctcacccaag
cgtaaagcattgccaaaggtggaacagatatctcttcccatgcacttccgtccagctgac
ttgtcacgggttgtcaaaaaagatgaattgttcagtgggctggagatgtgcgtaatgagt
ggggatgaagactccaccaaacaacagctggagaagatggtggtagagcatggtggttcc
ttgactcagcacccaggagggaacacttattgtatcatcacagacacaaggtctgttcgt
gtcaacaattacatagcgacctccacttacaatgttattcggccatcatgggtcatcacc
tgtactgccaagtgttgcctggtgccatggggtcccttagatgccatacatgtcatggaa
aaagaaaaaatacgcatgcaggagttgtttgacaaatttggcgacagctattatgagccc
acagatgagaagacggtgaaaagagttatggagaacatgaagcaagaggactgtattcct
ctgacagtagaggaaatgcgtgaattcgatgaggcaatgtgcgagatagatgaaacccgt
gcattgttccgtccagtcacagctgtgtttattgatggggaagggcaagaactagcctcc
cttgcacttaggctgcatggaggttttgtcgagaggagttcgtctggggtgacacatatt
gttgtgtcggacaaggaaggaggtaactgcagcttacggccaagtgagtaccaggggcag
catctagttacatcgaagtgggtatatgactgcatcgaaaaatgcaaacttttggaggag
cgctattatatgccatga
DBGET
integrated database retrieval system
