Penaeus monodon (black tiger shrimp): 119575369
Help
Entry
119575369 CDS
T08784
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03013
Nucleocytoplasmic transport
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119575369
09122 Translation
03013 Nucleocytoplasmic transport
119575369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119575369
03041 Spliceosome [BR:
pmoo03041
]
119575369
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119575369
Spliceosome [BR:
pmoo03041
]
Complex C
Other components
EJC/TREX
119575369
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119575369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
LIP
DncV_C
RecC_C
Myb_DNA-binding
UCH
Motif
Other DBs
NCBI-GeneID:
119575369
NCBI-ProteinID:
XP_037778867
EnsemblRapid:
LOC119575369
LinkDB
All DBs
Position
7:44775429..44803886
Genome browser
AA seq
686 aa
AA seq
DB search
MADSGLTFHRVFTKVQSTLPHCIENNDAQSITDIFSSKINETTKHCVESAVRNYVTKTVI
NGELTEIDTIKAVTSICIELVRNELCLPTLPVLVLSDSFDMLTITQCEKLFTFVETNVSV
WKEDTFFAPCKTSVLRMCNDLLRRLSRSQNTVFCGRILLFLARFFPFSERSGLNLISEFN
LENVTTFTNVETEMEEDEGTDKGVDGRLKLDYTLYTKFWSLQDFFRNPVQCFQKAPWKMF
TTYCGDVLEAFRSFKLDNVQSSGTSAARLSRTLSEPVPTEGNSTLQPQVDQYFAKYLTNQ
KLLDLQFSDANFRRYVLLQILILAQYLTSDIKFKQEKLTEEQHEWVKKTEELVYTLLAET
PPDGPVFVKTVKHILKREEMWSVWKNEGCPEFKKTSVNTLHNNSTHQAEEMEDADLKSPA
KKRPKRKLGDLVRDFDKKNKHTGVNNEMTRLWNLKLDNLDACKMAERDFVPALEDYFTQA
IEQLSPKSDGKEQDKLVNDSNFGWRGLRLLACRSPHFFTHSASPIATLPEYLTTMIKKLA
KELPSQLSEDIKVDEEDNKEEDKVIPVLEQNDGVKEEEEDMEDDTAEAERPEIRAINLEE
QRALAKNLEKIGGDKWKVLAKKLGFQSDEIEYIESEKSKDNGTVADQAALMLQIWVENEG
EEASKENLLYTLGGLKMTEIADGVFT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcaggactgacttttcatcgagtttttacgaaagtacagtccacattacct
cattgtattgagaataatgatgcccaatctattaccgacatcttctcatcaaaaattaat
gaaacaacaaaacattgcgtggaatctgctgtccgcaattacgtgacaaagacggtgatc
aatggagagttgacagagatagacaccatcaaagcagtgacatcaatatgcatagagttg
gtcagaaatgaattatgtcttccaacacttcctgttttggtcctctctgattcctttgac
atgctgaccataactcagtgtgaaaaattatttacatttgttgaaactaatgtcagtgtt
tggaaggaagacacattcttcgctccatgcaagaccagcgttcttcgtatgtgcaatgat
ctacttcgtaggctttctcgctcccaaaacacagtattttgtggacgaatccttttgttc
ttggccagattcttcccattctctgaacggtcagggttgaacctcatctcagaattcaac
ctggaaaatgtcactacttttacaaatgtggagacagaaatggaagaagatgagggaacc
gacaaaggagttgatggacgactcaaattggactatacactgtacaccaagttctggtct
ttgcaggatttctttagaaatcctgtgcagtgcttccaaaaagcaccatggaagatgttc
acaacgtactgtggggatgtactggaagccttcaggagctttaaactggacaatgttcag
agcagtggaacttctgcagctcgtctttctaggacattatcagaacctgttccaacagaa
ggaaactctactttgcagcctcaagtggatcagtactttgccaaatacttaacaaaccag
aaactgcttgacctgcagttctcagatgccaattttcgccgatatgtgttgttgcagatc
ttgattttggctcagtacctcacctcagacatcaagtttaagcaggaaaagctaacagaa
gagcagcacgaatgggtaaagaaaactgaagagcttgtttacacactcttggcagaaaca
cccccagatggacctgtatttgtcaagacagtgaaacatattttaaaaagagaggaaatg
tggagtgtttggaaaaacgagggatgcccagaattcaaaaaaacaagtgttaacacttta
cataacaattctactcatcaggcggaagaaatggaggatgctgacttgaaatcccctgca
aagaaacgacctaagcgaaaacttggggacctagttcgagattttgataaaaagaacaaa
cacacaggagtcaataatgaaatgacccgcctctggaatctaaaactggacaacttggat
gcctgcaagatggcggagagagattttgtgcctgcacttgaagattacttcacacaagcc
attgagcaactctcgccaaagtcagatggaaaagaacaggacaaattagtgaatgacagc
aatttcggctggagaggtctgcgactattggcctgtcgttctccacactttttcacacac
tctgccagccccattgccaccttgccagaatatctaacaacaatgatcaagaagttggca
aaggaacttccttcacagctttcagaagacattaaggtagatgaggaagacaacaaggaa
gaggataaggtgattccagttctagaacagaatgatggagtgaaggaagaagaagaggac
atggaagatgacacagcagaagcagaaagaccagagatccgtgccatcaatttagaggag
caaagagccctagcaaagaaccttgagaagattggtggagacaagtggaaggtcttggcc
aagaaactaggatttcagagtgatgagattgagtacattgaaagtgagaagagtaaagac
aacggtactgtggcagatcaagcagccctcatgcttcagatctgggttgagaatgaaggc
gaagaagccagcaaagagaatcttctgtacactcttggtggcttaaagatgacagaaatt
gctgatggtgttttcacatga
DBGET
integrated database retrieval system
