Penaeus monodon (black tiger shrimp): 119585172
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Entry
119585172 CDS
T08784
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03022
Basal transcription factors
pmoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119585172
09124 Replication and repair
03420 Nucleotide excision repair
119585172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoo03021
]
119585172
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119585172
Transcription machinery [BR:
pmoo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119585172
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119585172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
119585172
NCBI-ProteinID:
XP_037789736
EnsemblRapid:
LOC119585172
LinkDB
All DBs
Position
19:31398521..31408701
Genome browser
AA seq
394 aa
AA seq
DB search
MNDDDDPKEYRWQSGYEKTWEAIQEDDSGRLEPSVTDMIRRAKRRKLLDREASVRLGIMR
HVFIILDLSQAMAEQDLKPTRQICTLKILDEFIREFHDQNPISQLGIIATQNKVAKRHSE
LSNNPQRHLDCIKRLHELPCRGEPSMQNSLEYALSALRHLPPHTSREILIIYAALTTCDP
GEIEATIQKVKDSNIRVSVVGISAELHVCKMISKDTGGSFSVSINDVHLKELIFEHLEPP
PASVKMDHTLIKVGFPHQVNTDARPALCMCHLDDLPPLNTRGYYCPQCTAKYCDLPAECR
VCGLMLVTAPHLARSYRHLFPLKHFEEVPIEEDQSFHCYGCLKHLTVAASDKNVYICRIC
KQVFCFECDIFLHETVHSCPGCASDPTISQYNSS
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgacgatgatcctaaggaatatcggtggcagagtggttacgagaagacatgg
gaggcaatccaggaagacgactcggggcgactcgagccctcggtcacggacatgatccgg
cgagccaagcgtcggaagctgctggatcgagaggcaagcgttcggctggggattatgcga
catgtcttcatcatactggatctctctcaggcgatggcagagcaagacttgaagccaaca
cgtcagatttgcacacttaagatattagatgaatttatcagagagttccacgatcaaaat
ccaattagccagttgggtattattgcaacccagaataaagtggccaagagacatagcgaa
ttgagcaataaccctcaaagacacttagattgtattaagcgccttcatgagcttccatgt
cgaggagagccatcgatgcagaattccttagaatatgccctgtcagccttgaggcatctt
ccaccacacacatctcgggaaattcttataatatacgctgccctgactacgtgtgaccca
ggagaaatagaggccaccatacagaaagtcaaagattccaacatacgtgtttcggtagtt
ggcatttctgcagagctacacgtctgtaaaatgataagcaaggacacaggtgggtccttc
tccgtctccatcaatgatgtccacctgaaggagttgatttttgagcaccttgagccccct
ccagcgtctgtcaagatggaccacacgctgatcaaggtcggtttccctcatcaagttaat
actgatgcccggcctgcactctgtatgtgtcaccttgatgatctacctcctctgaacaca
cgtggatactactgtccacagtgcactgccaagtattgtgatcttcctgctgagtgccgc
gtttgtgggctcatgttggtaacagctccccacttagcacgatcttacagacacttattc
ccgctgaagcattttgaagaggtgcccattgaggaggatcaaagcttccactgttacggc
tgcctgaagcacttgaccgtggcagcgtctgataaaaatgtatacatctgccggatatgt
aagcaagtgttttgcttcgaatgtgatatttttctccacgagacggtccattcctgtcct
ggttgtgcttcagacccaacaatatctcagtacaactcaagctaa
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