Pseudomonas soli: O165_004615
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Entry
O165_004615 CDS
T03276
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O165_004615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmos03400
]
O165_004615
Enzymes [BR:
pmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O165_004615
DNA repair and recombination proteins [BR:
pmos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O165_004615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AIN57622
UniProt:
A0AA86F430
LinkDB
All DBs
Position
complement(954785..958234)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAVAEAASTAGRFTLLLTADSQAADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQKIDVEQMRARLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPESQRSIDKVDSIRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDMTRPLLPPAELFLPVEDCFARLKQWPRVVVSAEDLDAGAGRERFPARALPNL
AIEAKAHQPLAELANFLDQFSGRVLFTAESAGRREVLLELLERLKLRPQTVDSWADFVTG
GERLAITIAPLDDGLLLDDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQTAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVASAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLTPQNP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggcgcggccttgagcctggccgtcgccgaggctgccagtaccgccggtcgcttc
accttgctgctgaccgccgacagccaggcggccgaccgcctggagcaggaactgcgcttt
ttcgcgccggaactgccggtgctgcccttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctctatcggttgccggag
ctgagccatggcattctcgtcgtgccgatcaccaccgccctgcaccgcctggcccccacg
cgcttcctgctgggcagcagcctggtgctggacgtgggccagaagatcgacgtcgagcag
atgcgcgcgcgcctggaagccagcggctaccgctgcgtcgacacggtctacgagcacggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaacagccgtac
cgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggaaagccag
cgctcgatcgacaaggtcgactcgatccgcctgctgccggcgcgcgagttccccatgcag
aaggacgaggtgacgcgcttcaaggcgcgcttccgcgaacgcttcgacgtcgacttccgc
cgtagcgcgatcttccaggacctcaccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaaccgccaccctgttcgactacctgccggccgacacccag
gtgttctcgctgccgggcgtggaacaggccgccgaacacttctggaacgatgtgcgcggg
cgctatgaagagcgccgcggcgacatgacccggccactactgccccctgcggaactgttc
ctgccggtggaggattgcttcgcacgcctcaagcaatggccacgggtggtagtcagcgcc
gaggacctcgacgccggcgcggggcgcgagcgcttccccgcccgcgccctgcccaacctt
gccatcgaggccaaggcccaccagccgctggcggaactggccaacttcctcgaccagttc
agcggccgcgtgctgttcaccgccgagtccgcgggccggcgcgaagtgctgctggagctg
ctcgaacgcctcaagctgcgcccgcagacggtcgacagctgggccgacttcgtcaccggc
ggcgagcgcctggcgatcaccatcgcccccctggacgacggcctgctgctggacgacccg
gccattgccctggtagcggaaagcccactgttcggccagcgcgtgatgcagcgcaggcgc
cgcgagaaacgcggcgaagcggccaacgacgcggtaatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgagttcctcaccctcgaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgattgcccgctacaccggcagcgacgacgca
ctggccccacttcaccggctgggctccgaggcctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgcgacgtcgccgccgagctgctcgatatctatgcccggcgcgccgcgcgc
aaaggctatgccttcgccgacccggccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcagaccgccatcgaggccgtgcgtgccgacatgctcgcc
ggccagcccatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtggcc
atgcgcgccgccttcatcgccgtgcacagcggccgccaggtggcggtgctggtgcccacg
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
aaggtcgaggtgatgagccgcttcaagtcggccaaggaagtggccagcgccgcagcggat
cttgccgagggcaagatcgacatcctcatcggcactcacaagctgctgcaggacgacgtg
cgcttcaaggacctgggcctggccatcatcgacgaggaacaccgcttcggcgtgcgccag
aaagaacagctcaaggcgctgcgcagtgaggttgacatcctgacgctgacggccacgccg
attccgcgcacgctgaacatggccgtgtcgggcatgcgcgacctgtcgatcatcgccacg
cccccggcgcggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtg
aaggaagcgctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaagtgcgcggccgagctggccgaactggtgcccgaggcacgcata
ggcatcggccacgggcagatgcgcgaacgcgagctcgagcaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgattgcctcgaccatcatcgagaccggcatcgacgtgcca
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcgcaattgcaccaa
ctgcgtggccgggtcgggcgcagccaccaccaggcctatgcctacctgctgaccccgccg
cgccagcagatcagcgctgacgccgagaaacgcctggaggccatcgccaatacccaggac
ctgggcgcgggcttcgtcctggccaccaacgacctggagatccgcggcgccggcgaacta
ctcggcgaaggccagagcgggcagatccaggcggtcggtttcaccttgtacatggagatg
ctcgaacgcgcggtcaaggccatccgcaagggcacccagccgaacctcgaacagccgctt
ggcggcggcccggagatcaacctgcgcctaccggcgctgatccccgaggactacctgccc
gacgtgcatgcgcgcctgatcctgtacaagcgcatcgcctcggcagccgacgaagagggg
ctcaaggacttgcaggtggagatgatcgaccgcttcgggctgctgccggagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaagaaggtc
gatgccggccccaacggcggcaagctcgaattcgaagccgaaaccccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgcgacccag
ttccgcttcctggtgccgatggaacgccccgaagaacgtttcaacaccctggaagcgctg
ttcgagcgcctcaccccacaaaatccataa
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