Petromyzon marinus (sea lamprey): 116940338
Help
Entry
116940338 CDS
T09614
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116940338 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116940338 (DDX46)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116940338 (DDX46)
Spliceosome [BR:
pmrn03041
]
Complex A
U2 snRNP components
U2 related factors
116940338 (DDX46)
Complex B
116940338 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
116940338
NCBI-ProteinID:
XP_032805925
EnsemblRapid:
ENSPMAG00000007922
LinkDB
All DBs
Position
8:14258442..14292515
Genome browser
AA seq
1064 aa
AA seq
DB search
MARDSRHHRKRSRSSSRGRSPAEKRSKAAESRDKKRERERDRRRTETQRTRRSSRERRRS
HSRERRSRRSRSRERKRSRTRSRSKERKRSKSKEKKEKPEPEEKEKPKEEEKDAASFEQG
KLEVEMRKRKERIEKWREEQKKKAHINIGDIKTQVELMSKQRKKWSLEDDDEDDDEGEGE
DEDEDSADKEEGDDEEPKLKVEEKEEMVQEVVVPVPEPAKPEQHMAIVQGVVDDDDDDGV
DPLDAFMEGIKEEVKKFNMGDAKTGEKLFGHLALGLNNAHYWCQQKAGSSVTKVVTVVTK
KQSEVEKPKGELMENDQDAMEYSSEEEDSDLATALTGYNQNKQRKMVEVVDHSKIAYEPF
RRNFYVEVPELAKMTAEEVSAYRLEMEGVMVKGKGCPKPIKTWVQCGISMKILNTLKKQN
YEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIGFLLPMFRHVMDQRPLEEGEGPIGVIM
TPTRELALQIAKECRKFTKQLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLA
ANSGRVTNFRRATYMVLDEADRMFDMGFEPQVMRIIETSRPDRQTVMFSATFPRAMEALA
RRILNKPVEVQVGGRSVVCSDVEQHVIVIEEDTKFYKLLELLGLYQEKGAVIVFVDKQEH
ADTLLKDLMKASYPCLSLHGGIDQYDRDSIINDFKSGVCRLMVATSVAARGLDVKHLIMV
VNYDCPNHYEDYVHRVGRTGRAGNKGYSYTFITSEQERYSGDIIKALELSGTPLPPDLER
LWTEFREKQKAEGKTMRKSSGFSGKGFKFDETEHSLVNERKKLQKVALGMHDSDEEEGSG
DIDQQIENMFRSKKIVKDVNAHGASSTGIMMPSGSNAQKLEIAKRLASKINSQRNLGTEA
MDVIQQATNSIMRGGTMNVPLVSAKSIAEQLAEKINAKLNYVPAEKLLEEERVEQEKQAD
KVRRYEEELEINDFPQTARWKVTSKEALAQISEYSEAAITIRGSYFAPGKEPTDGERKIY
LAIESTSELSVQKAKAEVTRLIKDELIRLQNSYQPINKSRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgattccagacaccaccgcaaacgttctcggtcttcgtcgcgcgggagatcg
ccagccgagaagcgctccaaggccgccgagagccgtgacaagaaacgcgagcgggaacgt
gaccgccggcgcacggagacccagcgcacgaggcgttcaagcagggagcgacggcgctca
cacagccgagagcgccgctcccgtcgctcccgctcgagggagcgcaaacgctcccgcaca
cgcagccgcagcaaggaacgcaagcgttccaagtccaaagaaaagaaggagaaacctgaa
ccagaagaaaaggagaagcctaaagaagaagagaaggatgctgccagctttgagcagggc
aagctggaagtggagatgaggaagaggaaggaacgcattgaaaaatggcgtgaagagcag
aagaagaaggcgcacatcaacattggcgacatcaagacgcaggtggagctcatgtccaaa
cagcggaagaagtggagcctggaggatgatgacgaggacgatgatgagggcgagggtgag
gatgaggatgaggattctgccgacaaggaggagggtgacgatgaagagccaaaattgaag
gtggaggagaaggaggagatggtgcaagaggtggtggtgccggtgccggagccggccaag
cccgagcagcacatggccattgttcagggtgtcgtcgacgatgatgacgacgatggcgtg
gaccccctggacgctttcatggagggcatcaaggaggaggtgaagaagttcaacatgggc
gacgcaaagacgggcgagaagctatttggacatttagctttggggttaaataacgctcat
tattggtgccaacagaaggcgggctcctcggttacgaaggtggtcacggtggtcaccaaa
aagcagtcggaggtagagaagcccaaaggggagctgatggagaatgaccaggatgccatg
gagtactcatccgaagaggaggactcggacctggccacggcgcttaccggatacaaccag
aacaagcagcgcaagatggtggaggtggtggaccactccaagattgcctacgagcccttc
cgccgaaacttctacgtcgaggttcccgagctggccaagatgacagcagaagaggtgagc
gcttacaggctggagatggaaggcgtcatggtgaagggcaagggttgccccaaaccaata
aagacctgggtgcagtgtggcatctccatgaagattctcaacaccctcaagaagcaaaac
tacgagaagcccacacccatccaggcacaagccattccggccatcatgtctggccgcgac
ctcataggcattgccaagacgggcagcggaaagaccatcggcttcctgctgcccatgttc
cggcacgtcatggaccagcggcctctggaggaaggggaggggcccatcggcgtgatcatg
acgccaacgcgcgagctggctctgcagatcgccaaggagtgcaggaagttcaccaagcag
ttggcgctgcgtgtggtgtgcgtgtacggtggcactggcatcagtgaacagatcgctgaa
ttgaagaggggtgcagaaatcatcgtgtgcacgcccggccgaatgatcgacatgctggct
gcaaacagcgggcgggtgactaacttcaggagggccacatacatggttcttgacgaggcc
gaccgcatgttcgacatgggcttcgagccacaggtaatgcgaatcatcgagacgtcgagg
ccggaccggcagacggtgatgttctcggccacgtttccgcgtgccatggaggcgctcgct
cgccgcatcctcaacaagcccgtcgaggtgcaggtcggaggtcgctctgtcgtctgctcc
gacgtcgagcagcacgtgatcgtgatcgaggaggacaccaagttctacaagctgctggag
ctgctgggcctgtaccaggagaagggggctgtcatcgtgtttgtggataagcaggagcac
gccgacacattgctcaaggacctcatgaaggcgtcctacccttgcttgtcactgcatgga
ggcatcgaccagtacgaccgcgacagcatcatcaacgacttcaagtcgggcgtgtgccgc
ctgatggttgccacgtcggtggcggcgcggggccttgacgtcaagcatctgatcatggtg
gtcaactacgactgccccaaccactacgaggactacgtgcaccgcgtgggccgcacgggc
cgcgctggcaacaagggatactcgtacacgttcatcacgagtgagcaggagcgatactcg
ggggacatcatcaaagccctggagctgtccggcacgcccctcccgcccgacctcgagagg
ctttggaccgaattcagggagaagcagaaggccgagggcaaaacgatgaggaagagcagc
ggcttctcgggcaagggcttcaagtttgacgagacggagcactcgctcgtcaacgagcgc
aagaagctgcagaaggtggcgctggggatgcacgactcggacgaggaggaggggtccgga
gacatcgaccagcagatcgagaacatgttccgctcgaagaagatcgtgaaggacgtgaat
gcgcacggagcttcctccaccggcataatgatgccatccgggagcaacgctcagaagctg
gagatcgccaagaggctcgcgtccaagatcaactctcagcgcaacctaggcacagaggcc
atggacgtgatccagcaggcgaccaacagcatcatgcgaggcggcaccatgaacgtgccc
ttggtgtcggccaagtcgatcgctgagcagctggcagagaagatcaacgccaagctcaac
tacgtgcccgccgagaagctgctagaggaggagcgcgtggagcaggagaagcaggcggac
aaggtgcggcgctacgaggaggagctcgagatcaacgacttcccgcagacggctcgctgg
aaggtgacctcaaaggaggcgttggcacagatcagcgaatactcggaggccgccatcaca
atccgtggctcctacttcgctccgggcaaagagccgactgacggagaacgcaagatctac
ctggccattgagagcaccagcgagttgtctgtgcagaaagccaaggctgaggtcactcgt
ctcatcaaggatgagctcatcaggctgcaaaactcgtaccagccgatcaacaagtcacgc
tacaaggttctgtga
DBGET
integrated database retrieval system
