Petromyzon marinus (sea lamprey): 116944419
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Entry
116944419 CDS
T09614
Name
(RefSeq) transcription factor SOX-5-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116944419
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116944419
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
116944419
NCBI-ProteinID:
XP_032813900
EnsemblRapid:
ENSPMAG00000032059
LinkDB
All DBs
Position
21:complement(5463285..5630470)
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AA seq
973 aa
AA seq
DB search
MEWSPGHARTTEETRGSPTAEARRGSPRGGLDAERAPRWSSAAEPRSCGDVELKMQHLLV
GRWSPDGRGSVVEVPSAENGSDQPTPFDAGGASGGGSNGGGGDPRKRVFHPDSSSEEEEG
AYSASEAKRRSPPLPPPTLPLSPRLRSFRNPRAEEKDGCGLPSPVAEERWRTVAGGGLLA
EELGGRGPVAEERWPRGRVLVVEEHADGGVVAEERWPHARELLAEEPGDGGPVAEERWPH
ARELLAEQPGDEGPVAEERWPRGRGRVVEEPAEGGVVADERADDGNSAAAAAAAVAAAGT
VSGTPERRKTCLADVVDSLKQRKLEALSRSEQDGCPASEQRAVPMKVKSFVPLAPAGDVQ
EQLQGSRDSLAEKERVLAAMMGQLSALREQILTAHDEQRRVAASQVERQRQASHLARQQQ
EQIARQQQQLLQQQQKINVLQQQIQGQLSPMMIPIFPPDQRAMAAQHGFVLPTALACKPV
EQYSLPLLPSTLGHAATPALSPLHLQIYAAHLAAMQSPAQCHSVSLPPAPAGGDRDRDKS
PTSACKEAPQPLNLSSRAHSAASSMLEVLGGGLGGGPPPSSSVLPLLHAVLGKASGASNN
MTAFGMLHQGLTAQTQHRVPEVKQERAARHDGKVAAALINSGRCVTEKLALESLMQRMMG
EARDDGKSGLGGVERASSEEMDGGGVFGDAKVFRDGRGRHAGEPHIKRPMNAFMVWAKDE
RRKILQAFPDMHNSSISKILGSRWKAMSSQEKQPYYEEQARLSKLHLERYPGYKYRPRPK
RTCIVDGRRLRVGEYKALMRSRREGGPAQLYPPSPTSQVPLTQPGSVYPSAIAMVTSGGG
PASSAAAGPAAHSPSRVQSECSSGSASPDCGPRPFHVHALAAGRLGLGLGGGGAAAVRVE
TLGGRRDFERMDYRGGGGVVAVGGTARQAEDEYYGEEARLYEDYDEARGAASDYESEGET
VHSDNGGFGLAGN
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggagtggagccccggacacgcacgcaccacggaggaaacccgcggcagccccaccgcg
gaggcgagacgcggttcccctcgcggaggcctggacgcggagcgagccccacggtggagc
tctgccgcggagccacggtcgtgcggggacgtggagctcaagatgcagcacctgctggtc
ggccgctggtccccggacggcagaggctccgtggtggaggttccgtcggcagagaacggc
tccgaccagcccacgccgttcgacgccggcggcgccagcggtggcggaagcaacggagga
ggcggtgatccgcgcaagcgagtgttccaccccgattcttcttcggaggaggaggagggc
gcctactcagcctccgaggccaagagaaggagtcctcctcttcctcctcctactcttcct
ctgtcaccacgcctccgctccttcaggaaccccagggcggaagagaaagacggttgcggg
ctgccgagccctgtcgcggaggagcggtggcgcaccgttgcgggaggaggcctcctcgcg
gaggagctgggaggcagaggtcccgttgcagaggagcggtggccgcgtggcagggttcta
gttgtagaggagcatgcggacggaggtgtcgtcgcggaggagcggtggccacacgccaga
gagctcctcgcggaggagcctggggacggaggtcccgtcgcggaggagcggtggccacac
gccagagagctcctcgcggagcagcccggggacgaaggtcccgtcgcggaggaacggtgg
ccgcgtggcagaggtcgcgtcgtggaggagccagcggaaggaggcgtcgtcgcggacgag
cgagccgacgatgggaactccgccgccgctgccgcggccgctgttgctgctgctggcact
gtgtcaggaactccggaacgtcgcaaaacctgcctcgccgatgtggtcgactcgttaaag
cagcgcaagctggaggctctgtccaggtcggagcaagatggttgcccagcgtctgagcag
agggccgtgccgatgaaggtgaagtcgtttgttcctttggcgccagctggagacgtccag
gagcagctgcagggctcgcgcgacagcctggcggagaaggagcgcgtgctggcggccatg
atgggccagctgtcggcgctgcgcgagcagatcctgacggcgcacgacgagcagcgacgc
gtggccgcctcgcaggtggagcgccagcgccaggcgtcgcacctcgcccgccagcagcag
gagcagatcgcccgtcaacagcagcagctcttgcagcagcaacagaagatcaacgtcctt
cagcagcagattcagggtcagctgtctccgatgatgattcccattttcccgccggatcaa
agggcgatggcggcccagcacggcttcgttctgcccaccgcgttggcctgcaagcccgtt
gaacagtactccctgcctctgctaccgtcaacgctggggcatgctgctacccctgccctc
tctccgctacacctgcagatttacgccgctcacctggccgcgatgcagtcgcccgcccag
tgccactcggtgtcgctgccgccggcgccggctgggggagaccgggacagagacaagagc
ccgacgagcgcttgcaaggaggccccgcagccgttaaacctgtcatcacgcgctcactcg
gcggcctcgtcgatgctggaggtgctgggcgggggcctggggggggggccgcccccctcc
tcctccgtgctgccgctgctgcacgccgtgctggggaaagcgagcggcgccagcaacaac
atgaccgccttcggaatgctgcatcaaggcctcacggcccagactcagcaccgggtccca
gaggtaaagcaggagcgtgcagcgaggcatgatgggaaagttgctgctgcactcatcaac
agcggccggtgtgtcacggagaagcttgctctggagagcctcatgcaaaggatgatggga
gaggcaagggatgatgggaagtcgggcctcggtggagtggaacgggcatccagcgaggag
atggatggcggcggcgtgtttggggacgccaaggtgttccgtgacggcagaggccggcac
gcgggagagccgcacatcaagcgcccgatgaacgcgttcatggtctgggccaaggacgag
cggcgcaagatcctgcaggccttccccgacatgcacaactcaagcatcagcaagatcctg
ggctcccgctggaaggccatgtcgagccaggagaagcagccgtactacgaggagcaggca
cggctcagcaagcttcacctggagcgctacccgggctacaagtaccggccgcggcccaag
cgcacgtgcatcgtggatggtcgccggctccgcgtgggcgagtacaaggcgttgatgcgc
tcgcgccgcgagggcggccccgcacagctctacccacccagtcccacgtcgcaggtgccg
ctcacgcagcccggctcggtgtatccctccgccatcgccatggtgacgagcggtgggggc
ccggcctcctcggcggcagcgggccccgccgcccactctccgtcacgcgtccaatcggag
tgctcgagcggctcggcgagcccggactgcggcccgcggcccttccacgtgcacgcgctg
gcggcgggccgcctgggcctgggcctgggcggcgggggcgctgccgcggtgcgcgtggag
accctggggggccgccgggacttcgagcggatggactaccgcggcggcggtggggtggtg
gcagtggggggcacggcgcgtcaggccgaggacgagtattacggcgaggaggcgcggctt
tacgaggactacgacgaggcgcggggcgccgcctcggactacgagagcgaaggggagacc
gtgcactccgacaacggcggattcggcctcgcgggaaactga
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