Petromyzon marinus (sea lamprey): 116946199
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Entry
116946199 CDS
T09614
Name
(RefSeq) RNA binding protein fox-1 homolog 3-like isoform X1
KO
K14946
RNA binding protein fox-1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116946199
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116946199
BRITE hierarchy
Motif
Pfam:
Fox-1_C
RRM_1
FAM101
RRM_5
TFIIA
Motif
Other DBs
NCBI-GeneID:
116946199
NCBI-ProteinID:
XP_032817056
EnsemblRapid:
ENSPMAG00000047559
LinkDB
All DBs
Position
26:complement(4592304..4786090)
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AA seq
415 aa
AA seq
DB search
MHCSGAPPNPAALPALGMIPHPACALAFLYIQQGTQEPPLPPEPMAHPYPSGQFAAPSQN
GVPADYGAAPPPPPHAALPHGVVPDYGSGQPGGGVAPPSDHDVAAALYTASAAAQPPPAS
HHHHHHHQQQQHHQQQQQQTAQSSGTVTTEETECSPLHHPAALGEGGEMKPQPKRLHISN
IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSGDAERAREKLHGSIVEG
RKIEVNNATARVMTNKKPINPYANGWKLNPVVSAVYGPEIYAAGLPYAVTAGTAAAAYRG
AHVRGRGRGGFYNTLRAATPTATLPPAYGGVVYQDAFYGADLFGGYTTYRYAQPATAAVY
SDSYGRVYTAADAYTHALAPAASYGVSAMSVQGWIQPLHPLLKTCNLPLEKSSNG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcactgctctggagcgccgcccaacccggccgccctgccagccctgggaatgatcccg
cacccggcctgcgccctggctttcctctacatacagcagggaacgcaggagcccccgctg
ccccccgagcccatggcgcacccgtacccgtcgggacagttcgcggcgccgtcccagaac
ggcgtccccgccgactacggagcggctccgccaccgccgccgcacgcggcgctcccccac
ggcgtcgtgccggactacggctccggtcagcccggcggaggcgtcgcgcctccatccgac
cacgacgtggccgccgccctctacacggcgtcggcggccgcgcagccgcccccggcgtcg
catcaccaccaccaccaccatcagcagcagcagcaccatcagcagcagcagcagcagacg
gcgcagagcagcggcacggtcacgacggaagagactgaatgctcccccctacaccaccca
gccgccctaggggagggaggagagatgaagcctcagcccaagcgcctgcacatctccaac
atccctttccgcttccgagaccccgacctccggcagatgtttgggcaatttgggaaaatc
ttggacgtggaaatcatcttcaacgagaggggttccaagggcttcggcttcgtgacattt
gagaacagcggggacgcggagcgggcgagagagaagctacatggcagcatcgtggaggga
aggaaaatcgaggtaaacaacgccacggcgcgcgttatgaccaacaagaagcccatcaac
ccctacgccaacggttggaagctgaacccagtggtgagcgcggtctatggcccagagatc
tatgcagccgggctcccgtacgcggtcacggcggggacggcggctgccgcctaccggggc
gcgcacgtgcgcgggcggggacggggagggttctacaacaccctgagggccgccaccccc
acagccacgctgccacccgcgtacgggggagttgtgtaccaggacgcgttctacggcgcc
gatctcttcggaggatatacgacctaccgatacgcgcagcccgccacggccgccgtgtac
agcgacagctatggacgcgtctacaccgcggcagacgcctacacgcacgcgcttgcgccc
gccgcttcctacggggtgagcgcgatgtctgtacaggggtggatacagccgcttcacccc
ctactgaaaacatgtaaccttcctctcgaaaagagctccaatggctag
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