Petromyzon marinus (sea lamprey): 116951603
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Entry
116951603 CDS
T09614
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03013
Nucleocytoplasmic transport
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116951603 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
116951603 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116951603 (THOC1)
03041 Spliceosome [BR:
pmrn03041
]
116951603 (THOC1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116951603 (THOC1)
Spliceosome [BR:
pmrn03041
]
Complex C
Other components
EJC/TREX
116951603 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116951603 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
116951603
NCBI-ProteinID:
XP_032826255
EnsemblRapid:
ENSPMAG00000030638
LinkDB
All DBs
Position
43:complement(9089455..9112886)
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AA seq
676 aa
AA seq
DB search
MSTAMLFDFTESRKALTTSAWESLKNKSTDVIVAAFGQLNGSELEKRSALDQAVRDVLKE
LIVRQSDCKDVLAVISLSIDSVTAGVCSASTPFLLLGDLLDGLPLDQCDHIFTFVEQNVG
TWKASTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENVTVFNTNETESTLCLKLTDDRDDTVDIEEGEMGEDDIVTTSSVPIDYNLYRKFWSL
QDFFRCPLQCYDRLQWRTFSKFSDEVLTVFKSFKLDDAHASSRVHGAGAVSRAHGEHAYF
AKFLTSEKLMDLQLSDSNFRRHVLLQHLLLFQYLKGQVKFKSSTSVLTDEQSLWIEDTIK
HVFQLLKETPPEGDKFSKAIEHILAREENWITWKNEGCPSFVKERPAETRPHRPRKRAAP
EDFLGKGSHKKILMGSEELTRLWNLCPDNMEACKAESREFLPSLEEFFDEAIEQADPESM
VDREYKVVNDSNYGWRALRLLSRRSPHFFQPTNQQFRSLPEYLENIVTRLAREMPPPSEE
IKTEDEQDNDDGLLKDGDSPEGAARAVTSRHLEACALLVGARWRALVQHLESGGGGGGGD
DDEEEDDGEGGAKAGSAAGRGEDEDDDEEGALEALLAWQEREGPRATVEALHTAISAIGL
SPPSDGSEPDAEGDRD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggcgatgttgttcgacttcacggagagcaggaaagcgctcacgacctcggca
tgggagtctctgaagaacaagagcaccgacgtgatcgtggcggcattcggacagctcaac
ggcagtgagctggaaaaacggagcgcactggaccaggctgtcagagacgtcctcaaggag
ttgatcgtgaggcagagcgactgcaaggatgtcctggcggttatctcactcagcattgac
agtgtcaccgcaggcgtgtgctcggcgtccaccccgttcctgctgctgggagatcttctg
gacggcctcccgctcgaccagtgcgaccacatcttcactttcgtggagcaaaacgtcggc
acctggaaggcgagcacgttctactctgccggcaaaaactacctcctgcgcatgtgcaat
gacctgctccgccgcctgtccaagtcacagaacaccgtgttctgcggacgcatccagctc
ttcctcgcgcggctctttcctctctcggaaaagtcaggtctgaacctgcagagtcagttc
aacctggagaatgtgactgtgttcaacaccaacgagacggagagcacgctgtgtctcaag
ctgacggacgatcgtgatgacacggtggacatcgaggagggagaaatgggagaggacgac
atagtgaccacgagctccgtgcccatcgactacaacctctaccgcaagttctggtccctg
caggacttcttccgctgtcccttgcagtgctacgaccgcctgcagtggaggaccttctcc
aagttctcggacgaggtgctcaccgtgttcaagagcttcaagctggacgacgctcatgcc
agtagccgcgtccacggcgccggcgccgtctcccgtgcgcacggagagcacgcttatttc
gccaagttcctcaccagcgagaagttgatggaccttcagctgagcgacagcaacttccgg
cgccatgtcctgctgcagcatctgctgctgtttcagtacctaaagggtcaggtcaagttc
aaaagctctacgagtgtgcttactgacgagcagtcgctgtggatcgaggacaccatcaag
cacgtcttccagctgctgaaggagacgcctcccgagggtgacaagttttcaaaggccatt
gagcacattctggcgcgagaggagaactggatcacgtggaagaacgagggctgccccagc
ttcgtgaaggagagaccggcagaaacacggccccatcgcccccgcaagagggcggctcct
gaagacttcttgggcaaggggtcccacaagaagatcctcatgggcagcgaggagctgacc
cggctgtggaacttgtgtcccgacaacatggaggcctgcaaagcggagagcagggagttc
ctgccgtcgctggaggagttcttcgacgaggcgatcgagcaggcggaccccgagagcatg
gtggaccgcgagtacaaggtggtgaatgactccaactacgggtggcgcgccctgcgtctg
ctctcccgccggagccctcacttcttccagccgaccaatcagcagttccgcagcttgccc
gagtacctggagaacatcgtgacgcggcttgccagggagatgcctcccccgtcagaggaa
atcaagaccgaggatgaacaagataacgatgacgggctgctaaaggacggagacagcccc
gagggcgccgcacgtgccgtgacgtcgcggcacctggaggcgtgcgccctgctggtgggc
gcgcgttggcgagcgctcgtccagcacctggagagcggcggcggcggcggcggcggcgac
gacgacgaggaggaggacgacggagagggcggggcgaaggccggcagcgcggccggacgc
ggggaggacgaggacgatgacgaggagggggccctggaggcgctgctcgcgtggcaggag
agggagggcccccgcgctaccgtggaggccctccacaccgccatcagcgccattggcctc
tcgccgccgtctgacggctcggagcccgacgcagagggggacagggattga
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