Paenibacillus mucilaginosus KNP414: KNP414_07350
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Entry
KNP414_07350 CDS
T01550
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pms
Paenibacillus mucilaginosus KNP414
Pathway
pms03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KNP414_07350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pms03400
]
KNP414_07350
Enzymes [BR:
pms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KNP414_07350
DNA repair and recombination proteins [BR:
pms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KNP414_07350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AEI45857
UniProt:
F8FPP0
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All DBs
Position
8045518..8046468
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AA seq
316 aa
AA seq
DB search
MEWQPIVPFEPIRTETAPSGDGWVGQIKWDGTRILTYASGGTVRLFNRKGHERTLQYPEL
LDLSSYCTAESVILDGEVIAIADGRPNFQEVMRRDSVRKAQHLALAQKQVPISYMIFDMP
YLDGEWITDKPLRERQRLLQERVRGNATVQLVPSVAGMNDLFGVMKQHKMEGIVCKDLES
KYLIGGKDKRWQKMKIYNDLVAVVGGVTHRAGQVNALMLGLYDAEGRLWYIGHAGAGRFT
QQTWRELTEKVREMTLPERPFVNVPERSKDAVWIKPVLTVKVSYMEWTAGRTLRQPSIQA
LVGAQPADCTFGQLDG
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
ttggaatggcagcccatcgttccgttcgagcccatccgcaccgaaaccgcgccctccggg
gacgggtgggtcgggcagatcaagtgggacggcacccgtattctcacctatgcttccggc
ggcaccgtcaggctcttcaaccgcaagggccatgaacggacgctgcagtaccccgagctg
ctcgacctgtcctcctactgcaccgccgaatcggtcattctggatggagaggtcattgcc
atcgcggacgggcgcccgaacttccaggaggtcatgcggcgcgacagcgtccgcaaggcc
cagcacctggcactggcgcagaagcaggtgcccatctcctacatgatcttcgacatgccg
tatctggacggggaatggatcaccgacaagccgctgagagagcggcagcggctgctgcag
gagcgggtccgcggcaatgccaccgtgcagctggtgccgagtgtcgccggcatgaacgac
ctcttcggcgtaatgaagcagcacaagatggagggcattgtctgcaaggatctcgagagc
aaatatctgatcggcggtaaagacaagcgctggcagaagatgaagatctacaacgatctg
gtggcggtcgtcggcggggtcacccaccgggcgggccaggtcaacgcgctgatgctcggc
ctgtacgacgccgaaggccggctgtggtatatcggccacgccggtgccgggcggttcacc
cagcagacttggcgggagctcacggagaaggtgcgggagatgaccctgcccgagcgcccg
ttcgtcaacgtgcccgaacggagcaaggatgcggtgtggatcaagcccgtgctcacggtt
aaagtgagctatatggaatggaccgccggccggacgctgcgccagccgagcatccaggct
ctggtcggcgcccagccggccgactgcacgttcgggcagctggacggctga
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