Paenibacillus mucilaginosus KNP414: KNP414_07928
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Entry
KNP414_07928 CDS
T01550
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pms
Paenibacillus mucilaginosus KNP414
Pathway
pms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNP414_07928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pms03019
]
KNP414_07928
Enzymes [BR:
pms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KNP414_07928
Messenger RNA biogenesis [BR:
pms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KNP414_07928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
AAA_22
rpo132
Motif
Other DBs
NCBI-ProteinID:
AEI46413
UniProt:
F8FKP5
LinkDB
All DBs
Position
complement(8622843..8624111)
Genome browser
AA seq
422 aa
AA seq
DB search
MTFQQLELIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPII
QLLSTQQGRPNGKRVIRSLILTPTRELAIQISDNAKAYGCFTNLRYGVIVGGVSQRPQEQ
LLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDEADRMLDMGFIHDMKRIIAKLPVK
RQTLFFSATMPPEITSLVNSLLKNPVKIEITPVSSTAERIKQMLYYVDKPNKLLLLIDLL
QDKSIASALVFTRTKHGADRVVRGLTKAKITAQAIHGDKSQNARQAALNNFKSGATRLLV
ATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRTGRAGLSGIAISFCENEEIPYLKDI
EKLTKQKIPVVTDHPYPMTMTEPVPATVGADRAKGAPSKDGARGHNGKSGGGRRRRRPHA
GK
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgacattccaacaattagagttgattccccctattattaaagcgctggccaaggaaaat
tatacccagcctacgcctatccaggagcaggcaatcccgccggtgctggcgggccgtgac
ttgttcggctgcgcccagacggggaccggcaagacagcagcattcctgctgccgatcatt
cagctgctgagcacacagcaggggcgcccgaacggcaagcgcgtcattcgttcgctgatc
ctgacacccacgcgtgagttggctattcagatttccgataacgccaaagcttacggatgc
ttcacgaatctgcgctatggtgtgatcgtgggcggcgtctcgcagaggcctcaggagcag
ctgctggagcagggcatggacattctgattgcgacaccgggtcggctgatcgacctaatg
aatcaagggttcgtcgacctgagtcacgtgcagattctggtgttggacgaagccgatcgg
atgctcgacatggggttcattcatgatatgaagcggatcatcgccaagctgcccgtcaag
cggcagacgttattcttctctgcgacgatgccgcccgagatcacgtccctggtaaactct
ttgctgaagaatccggtgaaaatagagattacccctgtttcctcaacggcggagagaatt
aagcagatgctctactatgtggacaagccgaataaactgctgctgctgattgatctgctg
caggacaagtcgatcgcaagtgctctcgtgttcacccgtacgaagcacggcgcggaccgg
gtggtgcgcggcttgacgaaggcgaagattacggcgcaggccatccatggcgacaagtcg
cagaatgcccgccaagcagcgctgaataatttcaagagcggtgcgacccgcttgctggtg
gcgacggacatcgcggcacggggcatcgacattgaggaactgtcgcacgtgattaactat
aatttgccgaatataccggagacgtatgtccatcggatcggccgtaccggacgtgcgggc
ttaagcgggattgcgatttcgttctgcgagaacgaggagattccttatctgaaggatatc
gagaagctgacgaagcagaaaatcccagtagttacagatcatccttacccgatgacgatg
acggagccggtgccggcgacggtgggggcggacagagccaaaggtgcaccatccaaggac
ggtgctcgcggacacaacggcaaatccggcggcggccgccgcagacggcgaccccatgcc
ggaaagtaa
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