Podarcis muralis (common wall lizard): 114582766
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Entry
114582766 CDS
T06059
Symbol
LIG4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmua
Podarcis muralis (common wall lizard)
Pathway
pmua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114582766 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmua03400
]
114582766 (LIG4)
Enzymes [BR:
pmua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114582766 (LIG4)
DNA repair and recombination proteins [BR:
pmua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114582766 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
RTT107_BRCT_5
DUF2087
Motif
Other DBs
NCBI-GeneID:
114582766
NCBI-ProteinID:
XP_028559856
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All DBs
Position
1:complement(135886766..135891706)
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AA seq
910 aa
AA seq
DB search
MSSISTSCSPSQLTVASQVPFEDLCSTLERIQKCKSRPEKTKNFKEFLDSWRKYHDALHK
NEKDVADSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTP
TGSRGDAGDFAMIAYFVLKQRCPRKGQLTIKQVNDILDSISNNNAAKRRDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTLLSIFHPDASELHNVTTDLEKVCRQLHNPSVFL
SDVSITLFSAFKPMLAAIADIQQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHNIFNKNIQNCILDGEMMAYNPTTQNFVQKGSKFDIKKMS
DDSELQTCFCVFDVLMVNNQKLGHEMLSKRYEKLNEIFTPIEGRLQFVPKNQANTQKEVI
DSLNEAIDNREEGIVIKDPMSIYKPDKRGEGWFKIKPEYVSGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETPLPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKYWKPYRKRDPP
FNILCGTEKPEVYIEPCNSVIVQIKAAEIVSSDMYKTDYTLRFPRIERIREDKEWHDCMT
LDILEQLRGKACGKLATKHFDIDNDEPQGKKRKTVPKIKKKIGLIDHFKAPDLSNVNQIS
SIFEDVEFCVMTGTQKYSKYQLESKIAEYGGSIVQNPGLDTYCVIAGIENVRVKNIISSD
KYDVVRAEWLLQCFQSKTFVPWQLDFMIHMSPETKQHFACEYDCYGDSYTGDIDIAKLKQ
VFSRMNNFQAEISQDAIADIEARYSWESSPLSMFRQHTIYLAPDELINSGARIKQTKLLT
AALILRFHGAKVVQQLEEGVSHVICGDHAHLKEIKTLRRTFKRKFKILSEQWVKDSIKTG
KLQNENAYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccatctctacttcctgttctccttcccaactaactgtggcatcacaagttcct
tttgaagatctctgttcaacattagaacgaatacaaaaatgcaaatcccgacctgagaaa
accaagaatttcaaggagtttttagattcctggaggaaatatcatgatgcgcttcataaa
aatgaaaaagatgtagcagattctttttatccagcaatgaggcttattcttccacagttg
gaaagagaaaggatggcttatggaattaaagaaaccatgcttgctaagctgtatattgag
ctcttaaatttacccaaagatggaaaagatgctttaaaactcttaaattatcgaacacct
actggctcacggggagatgctggagactttgctatgattgcctattttgtgttgaaacaa
aggtgtcccaggaaaggtcaactgaccataaaacaagtgaacgatattttagattccatt
tctaataataatgctgccaaaaggagggatctggtcaagaagagccttcttcagttaata
actcagagttcagcacttgaacagaaatggttgatcaggatgatcataaaagatttgaaa
cttggtgtcagccagcaaaccttactttccatctttcatcctgatgcttcagagttgcac
aatgttacaactgatttggagaaagtctgtagacagttacacaatccttctgtatttctt
agtgatgtttctattacattattttctgcctttaaaccgatgcttgctgctattgctgat
atacaacaaattgaaaaacaaatgaacaaccagagtttttacatagaaaccaaattagat
ggtgagcgaatgcagatgcacaaagatggagatgtttacaagtatttttcccgaaatggg
tatgattatactcagcagtttggagcttctcccttggaaggttcattgactccatttatt
cataatatcttcaacaaaaatattcagaactgcattctggatggtgaaatgatggcctac
aatcccaccacacagaactttgtacagaagggtagcaaatttgacatcaaaaagatgtca
gatgattcagaattacagacatgcttctgtgtgtttgatgttctcatggttaataaccaa
aaattgggtcatgagatgttgagcaaaagatatgagaaactgaatgagatatttacacca
atagaaggtcgtttgcagtttgttcctaaaaatcaagctaacactcagaaagaagtaata
gattctctaaatgaagcaatagataacagagaagaaggaattgtgataaaagatcccatg
tcaatttacaagccggacaaacgtggggaaggatggttcaagatcaaaccagagtatgtt
agtggactaatggatgaactagaccttttaattgttgggggctactggggaaaaggtctt
cgtggtggcatgatgtcacattttttatgtgcagttgctgagactcctctgcctggtgaa
aaaccatcagtgtttcactccatttgtcgtgttggttctggttacactatgaaagaactt
tatgatcttggcttgaaattagccaaatattggaaaccttatcgtaaaagagatcctcct
tttaatatcttgtgtggaactgagaagcctgaagtctatattgagccttgtaattcagtc
atcgtccagattaaagcagcagagattgtgagcagtgatatgtacaaaactgattataca
ttacgtttccctcgtattgagaggataagagaagataaagaatggcatgattgtatgact
cttgacattctagagcaactcagaggtaaagcttgtggaaagctagcgactaagcacttt
gatatagataatgatgagccacaaggaaagaaacgtaaaactgtgcccaagattaaaaaa
aaaattggtttaatagatcattttaaagctcctgatctttcaaatgtaaaccagatttct
agcatatttgaagatgttgagttttgtgttatgacagggacgcaaaaatattcaaaatat
cagctggaaagtaaaatagcggaatatggcggcagcatagtccagaatcctggtttggac
acctattgtgtgattgcaggaattgagaatgtcagagtgaaaaatattatttcttctgac
aagtatgatgtcgtgagagcggagtggcttttgcagtgctttcaatccaaaacatttgta
ccctggcagcttgatttcatgattcacatgtctccagaaacaaaacaacattttgcctgt
gaatatgactgctatggtgatagttacacaggtgatattgatattgccaaactaaagcag
gtgttctcaagaatgaataactttcaggcagagatctctcaggatgcaattgctgacata
gaagcacgttattcatgggaaagctctccactaagtatgtttaggcagcacacaatttac
ctggctcctgatgaattgattaattcaggtgctaggattaaacaaacaaaactattaact
gcagcactgatacttcgatttcatggagcaaaagtggttcaacagcttgaagagggtgtg
tcccatgtaatctgtggagatcatgctcatttgaaggagataaagactctgagaagaacg
ttcaaaaggaagtttaaaattttgtctgagcagtgggtaaaggattctataaagactggc
aagttacaaaatgaaaatgcttacttaatttaa
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