Pseudomonas mucidolens: NCTC8068_02325
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Entry
NCTC8068_02325 CDS
T08935
Symbol
ligD_1
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC8068_02325 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_02325 (ligD_1)
Enzymes [BR:
pmud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC8068_02325 (ligD_1)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC8068_02325 (ligD_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
SQH33346
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All DBs
Position
1:complement(2559960..2562473)
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AA seq
837 aa
AA seq
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MAKPLSEYQRKRNFEITSEPSESAPASKRRASASALSFVIQKHDARNLHYDFRLELDGVL
KSWAVPKGPSLDPSQKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGVWQPHGDP
LQSYTAGKLKFTLIGEKLAGDWTLVRTRLKGSGDKEQWLLIKENDQQARASDDYDIVTAE
PKSVLSGASVGRAKATTSARKKTSKKTVLPEHLAPQLATLVDRAPAGHWIYEIKFDGYRI
LARIRNGQVRLFTRNGHDWTDRLPRQVKALEALKLQDSWLDGEVVSLNADGLPDFQALQN
AFDIGRSLDIVYYLFDTPFLEGRDQRGDPVEKRRAALKEAMARNNSKLLRFSTAFTANQQ
DIFESACDLSLEGVIGKRAGSPYNSCRSPDWIKLKCRLRQEFVIIGYTQPKGSRSGFGAL
LLAVNDEVGLVYAGRVGTGFDQAALKSIYTKMQPLERESPALDKPLSGVQGHGVRWIEAQ
LVAEVQFAEWTREGVVRQAAFVGLRTDKPVEQIVHELPRPAKSLKATKTAAPHIADADKA
NVAGVKITHPARIIDAQSGTQKQQLARFYEAIGEWILPHLRNRPVSLLRAPEGVEGEQFF
QKHAERLAIPHIKQLDQALDPGHARLMEINSVEALTGAVQMGTIELHTWGATTNKIETPD
LFVLDLDPDPALPWKSMLEAAQLTLAVLDELGLDSYLKTSGGKGLHFIVPLARRDGWETL
KVFTKAIAQFMAKQLPERFTATSGPKNRVGKIFIDYLRNSRGASTVAAYSVRARPGLPVS
VPVSRDELNGLRGAQQWNIANLHQRLQGLQEDPWAGYANRQRISQKMWEKLGAHPPD
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgagtgaataccaacgcaagcgtaacttcgagatcacctcagagccc
tccgaatcggcgcccgcttcaaagcgccgagcctcggcgtcggccctgtcgtttgtgatc
cagaagcatgacgcgcgtaacctgcactatgattttcgcctcgaactcgacggggtactc
aagagctgggcggtgcccaagggaccaagcctggacccgagccagaaacgcctggcggtg
cacgtcgaagatcacccgttaagctacggcggcttcgaaggcagcatccctgccggccaa
tacggtgcgggtgacgtgattgtgtgggaccgtggcgtctggcaaccccatggcgatccg
ctgcagagctacaccgccggcaaactcaagttcaccttgatcggtgaaaaactcgcgggt
gactggacgttggtccgtacccggctcaagggcagcggtgacaaggaacaatggctgctg
atcaaggaaaatgaccagcaggcacgcgcctcggatgattacgatatcgtcaccgccgaa
cccaaaagtgtcttgagcggcgcatcggtggggcgggcaaaggccacgaccagcgcgcgc
aagaagaccagcaagaaaaccgttctgcccgaacaccttgcgccgcaactggccaccttg
gtagacagggcgcccgcaggccattggatatacgaaatcaagttcgacggataccggatc
ctggcccgtattcgcaacggccaagtgcgcctgttcacccgcaacggccatgactggact
gatcgcctgccccgccaggtcaaagccctggaggcgctgaaactccaggacagttggctg
gatggcgaagtagtcagcctgaatgccgatggccttccagactttcaggcactacagaac
gcgtttgatatcggtcgcagcctggacatcgtctattacctgttcgacacgcccttcctc
gaaggccgcgaccagcgaggcgacccggtggaaaaacgtcgagccgcactgaaagaggcg
atggcacgcaacaacagcaaattgctgcgcttctccacagccttcaccgccaatcagcaa
gatattttcgaaagcgcctgcgacctttccctcgaaggcgtcattggcaagcgcgccggc
agtccctacaactcttgccgcagcccggactggatcaaactcaaatgtcgcctgcgccag
gagttcgtgattatcggctacacccagccaaaagggtcgcgcagcggctttggcgcgttg
ttgctggcggtcaatgatgaggttggcctggtctacgccggacgcgtaggaaccgggttc
gaccaggcggcgctgaaatccatatacacgaaaatgcagcctctggagcgcgagtcgcca
gcgctggataagcccttgtccggcgtccaggggcacggcgtgcgctggatcgaagcgcaa
ttggtcgccgaggtacagtttgccgaatggacccgcgaaggcgttgtacgccaggcggcc
tttgtcgggctgcgtacggataaacctgtggagcagatcgtgcatgagctaccgcgtcca
gccaagtccttgaaagccacgaaaaccgctgccccgcacatcgcggatgctgacaaggct
aacgtcgccggggtaaaaatcacccatccggcgcggatcattgatgcccaaagtggcacg
caaaagcagcaactggcgaggttctacgaggccatcggcgagtggatcctgccgcacctg
cgcaaccgtcctgtctcgctgctgagggcgccagaaggcgtcgaaggtgaacagtttttt
cagaagcacgccgagcgcctggcgatcccccatatcaagcagctggatcaggcgctggac
cccggacatgcacgcctgatggaaatcaacagcgtggaggcgctgaccggcgcggtgcag
atgggcacgatcgagctgcacacctggggcgcgacgacgaacaagatcgagaccccggat
ctgtttgtgctcgacctcgacccggacccggcattgccctggaaaagcatgctggaagcc
gcgcaattgaccttagcggtgttggatgaactgggcctggatagctacctcaagaccagc
ggtggcaagggcttgcatttcatcgtcccgttggcacgcagagatggctgggaaacgctg
aaggttttcaccaaggccatcgcacagttcatggcaaagcaattgccggaacgctttacc
gccacctcggggccgaaaaatcgcgtcgggaagatatttatcgattacctgcgcaatagc
cgcggagccagtacggttgcggcctactcggtccgggcccgaccgggcttaccggtgtct
gtgcctgtcagccgggatgagttgaacgggctgcgcggcgcgcaacaatggaacatcgcc
aacctgcaccaacggttgcagggtttgcaggaggatccatgggcgggttacgccaatcga
cagcgaatcagccagaaaatgtgggagaagctgggagcgcatccgccagactga
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