KEGG   Pseudomonas multiresinivorans: G4G71_15665
Entry
G4G71_15665       CDS       T07281                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmui  Pseudomonas multiresinivorans
Pathway
pmui03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmui00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G4G71_15665 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmui03400]
    G4G71_15665 (ligD)
Enzymes [BR:pmui01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G4G71_15665 (ligD)
DNA repair and recombination proteins [BR:pmui03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G4G71_15665 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QJP09247
UniProt: A0A7Z3BMU0
LinkDB
Position
complement(3440631..3443171)
AA seq 846 aa
MAGAKAVKDSTLKEYARKRDFSGTPEPRGESPAYREGEAAFVVQKHDASHLHYDFRLELD
GVLKSWAVPKGPCLDPSVKRLAIEVEDHPLDYAGFEGHIPEGHYGAGDVIVWDEGRWIPI
GDPHEGLGSGHLKFRLVGSKLTGSWNLIRTRMAGRQPQWFLIKGRDDQARDYPRYDILTE
QPLSVVSGQALPSEAVGARPASPKHARPGAAVKKPATRKTPGKASLPAAVSPELATLVDA
PPAGDWRYEIKLDGYRLLARLDGDQVKLLTRNGHDWSKKLPELCAALSALPVSSGWLDGE
ILVMDEEGRPDFQRLQNAFDAAVSAPIHYTLFDLLWLDGEDYRNKPLEQRRQALAQVLRG
NGNDCLRYSEDFTDDPRSILDSACRLGLEGLIGKRAGSLYTEKRSSDWIKLKCKRRQEFV
IVGYSEPKGSRSYFGALLLALHDENGELRYAGKVGTGFSAASLKRLHQQFQPLQRKTCPL
REPPKGADAKGVTWLRPELLGEVAFAEITREGRVRQAVFHGLRSDKPAQAIVEEKPNKAG
RADAASPSRSNSGNVLEGVTVTHPERVVDPTSKLRKIDVARYYDKAAECLLPWLADRPVS
LVRAPDGVAGEQFFQRHASRTGIPGAEQLDPQLDPGHAPLLRIASAKALVGAAQMGALEL
HTWNAALDDLEKPDRFVLDLDPDPALPWQRMIEATQLTLTLLDELGLTAFLKTSGGKGMH
ILVPLQRHHGWDEVKDFAHAISRYMARLMPDRFSAVSGPKNRVGKIFIDYLRNSRGASTV
CVWSVRAREGLPVSVPISRDELPTLKSANQWTLANVDERLAGSDPWAEWAKTRQRLSAKM
RGKLDG
NT seq 2541 nt   +upstreamnt  +downstreamnt
atggccggggccaaagccgtcaaggacagcaccctgaaggaatacgcgcgcaaacgcgac
ttcagcggcactcccgagccacgcggcgaatcaccggcgtaccgggagggggaggctgcc
ttcgtcgtgcagaagcacgacgccagccacctgcattacgacttccgcctcgaactcgat
ggtgtgctcaagagctgggcggtgcccaagggcccctgcctcgatcccagcgtgaagcgc
ctggccatcgaggtggaggatcatccactggactacgcgggcttcgaaggtcacatcccg
gaaggtcattacggtgccggcgacgtgatcgtctgggacgagggccgctggatacccatc
ggcgatccccacgaaggcctcggcagtggccacctcaagttccgcctggtgggcagcaag
ctcaccggcagctggaacctgatccgcacccgcatggccggacggcagccgcagtggttc
ctgatcaaggggcgggatgaccaggcacgggactacccgcgctacgacatcctcaccgag
cagccgttgagcgtggtctccgggcaggcattgcccagcgaggcggtcggagccaggccg
gcctcgccaaagcacgccaggcctggggcggctgtgaagaaaccggccacgaggaaaacg
cccggcaaggccagcctgccggcggctgtttctcccgagctcgccactctggtggacgcg
ccaccggcaggcgactggcgctacgaaatcaagctcgatggctaccgcctgcttgcccga
ctcgacggcgaccaggtcaagctgctgacccgcaacggccacgactggtcgaagaagctg
cccgaactgtgcgcggcgctgtcggcactgccggtgtcgtccggctggctggacggcgag
atactggtgatggacgaggagggccgcccggacttccagcgcctgcagaatgccttcgat
gccgcggtctcggcgcccatccactacacgttgttcgacctgctctggctggatggcgag
gattaccgcaacaagcccctggagcagcggcgccaggcgctggcacaggtcctgcgcggt
aatggcaatgactgcctgcgctattccgaggacttcaccgacgacccgcgcagcatcctc
gacagcgcctgccggctcggcctggaagggctgatcggcaagcgtgcgggcagcctctat
acggaaaaacgctcctccgactggatcaagctcaagtgcaagcgccggcaggagttcgtg
atcgtcggctacagcgaacccaagggctcgcgctcgtatttcggcgccttgctgctcgcg
ctgcacgacgagaacggcgaactgcgctacgccggcaaagtaggcaccggtttcagcgcg
gccagcctgaagagactgcatcagcagttccagccgctgcagcgcaagacctgcccgctg
cgggagccgcccaagggagccgacgccaagggcgtgacctggctgcgtccggaattgctg
ggcgaagtcgccttcgccgagatcacccgcgaaggcagggtgcgccaggcggtgttccac
ggcctgcgcagtgacaagccggcgcaggcgatagtcgaggaaaaaccgaacaaggctggc
cgcgccgacgctgccagcccgtcacgctcgaacagcggcaatgtcctggaaggcgtgacc
gttacccatcccgagcgagtggtcgatcccaccagcaagctgcgcaagatcgatgtggcg
cgctactacgacaaagccgcggaatgcctgctgccctggctggccgaccgcccggtgtcc
ctggtgcgggcgcccgatggtgtggcgggcgagcagttcttccagcgccatgcctcgcgt
accgggattcccggcgccgaacaactggacccgcagcttgatcctggccacgcaccgctg
ctgcgcatagcctcggccaaggcgttggtgggtgccgcgcagatgggcgcgctggagctg
catacctggaacgccgcgctcgatgacctggagaaacccgaccgcttcgtcctggacctc
gaccccgatccggcgctgccctggcagcggatgatcgaggcgacccagttgaccctcacg
ttgctggatgaactgggcctgacggccttcctcaagaccagcggcggcaagggcatgcat
atcctcgtgccgctacagcggcaccatggctgggatgaagtgaaggacttcgcccatgcc
atcagccgatacatggcccgcctgatgccggaccgcttcagcgccgtatcggggccgaag
aatcgtgtcgggaagattttcatcgattacctgcgcaacagccggggcgccagcacggtg
tgcgtatggtcggtgcgcgcgagagaggggctgccggtctcggtgccgatcagccgcgat
gagcttcccacgctcaagtcggcaaaccaatggaccctcgcgaatgtcgacgagcgtctg
gcaggctccgacccctgggccgaatgggcgaagacccggcaacggttgagcgcgaaaatg
cgcggcaagctggacggctga

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