Pseudomonas multiresinivorans: G4G71_15665
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Entry
G4G71_15665 CDS
T07281
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmui
Pseudomonas multiresinivorans
Pathway
pmui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G4G71_15665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmui03400
]
G4G71_15665 (ligD)
Enzymes [BR:
pmui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G4G71_15665 (ligD)
DNA repair and recombination proteins [BR:
pmui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G4G71_15665 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJP09247
UniProt:
A0A7Z3BMU0
LinkDB
All DBs
Position
complement(3440631..3443171)
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AA seq
846 aa
AA seq
DB search
MAGAKAVKDSTLKEYARKRDFSGTPEPRGESPAYREGEAAFVVQKHDASHLHYDFRLELD
GVLKSWAVPKGPCLDPSVKRLAIEVEDHPLDYAGFEGHIPEGHYGAGDVIVWDEGRWIPI
GDPHEGLGSGHLKFRLVGSKLTGSWNLIRTRMAGRQPQWFLIKGRDDQARDYPRYDILTE
QPLSVVSGQALPSEAVGARPASPKHARPGAAVKKPATRKTPGKASLPAAVSPELATLVDA
PPAGDWRYEIKLDGYRLLARLDGDQVKLLTRNGHDWSKKLPELCAALSALPVSSGWLDGE
ILVMDEEGRPDFQRLQNAFDAAVSAPIHYTLFDLLWLDGEDYRNKPLEQRRQALAQVLRG
NGNDCLRYSEDFTDDPRSILDSACRLGLEGLIGKRAGSLYTEKRSSDWIKLKCKRRQEFV
IVGYSEPKGSRSYFGALLLALHDENGELRYAGKVGTGFSAASLKRLHQQFQPLQRKTCPL
REPPKGADAKGVTWLRPELLGEVAFAEITREGRVRQAVFHGLRSDKPAQAIVEEKPNKAG
RADAASPSRSNSGNVLEGVTVTHPERVVDPTSKLRKIDVARYYDKAAECLLPWLADRPVS
LVRAPDGVAGEQFFQRHASRTGIPGAEQLDPQLDPGHAPLLRIASAKALVGAAQMGALEL
HTWNAALDDLEKPDRFVLDLDPDPALPWQRMIEATQLTLTLLDELGLTAFLKTSGGKGMH
ILVPLQRHHGWDEVKDFAHAISRYMARLMPDRFSAVSGPKNRVGKIFIDYLRNSRGASTV
CVWSVRAREGLPVSVPISRDELPTLKSANQWTLANVDERLAGSDPWAEWAKTRQRLSAKM
RGKLDG
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggccggggccaaagccgtcaaggacagcaccctgaaggaatacgcgcgcaaacgcgac
ttcagcggcactcccgagccacgcggcgaatcaccggcgtaccgggagggggaggctgcc
ttcgtcgtgcagaagcacgacgccagccacctgcattacgacttccgcctcgaactcgat
ggtgtgctcaagagctgggcggtgcccaagggcccctgcctcgatcccagcgtgaagcgc
ctggccatcgaggtggaggatcatccactggactacgcgggcttcgaaggtcacatcccg
gaaggtcattacggtgccggcgacgtgatcgtctgggacgagggccgctggatacccatc
ggcgatccccacgaaggcctcggcagtggccacctcaagttccgcctggtgggcagcaag
ctcaccggcagctggaacctgatccgcacccgcatggccggacggcagccgcagtggttc
ctgatcaaggggcgggatgaccaggcacgggactacccgcgctacgacatcctcaccgag
cagccgttgagcgtggtctccgggcaggcattgcccagcgaggcggtcggagccaggccg
gcctcgccaaagcacgccaggcctggggcggctgtgaagaaaccggccacgaggaaaacg
cccggcaaggccagcctgccggcggctgtttctcccgagctcgccactctggtggacgcg
ccaccggcaggcgactggcgctacgaaatcaagctcgatggctaccgcctgcttgcccga
ctcgacggcgaccaggtcaagctgctgacccgcaacggccacgactggtcgaagaagctg
cccgaactgtgcgcggcgctgtcggcactgccggtgtcgtccggctggctggacggcgag
atactggtgatggacgaggagggccgcccggacttccagcgcctgcagaatgccttcgat
gccgcggtctcggcgcccatccactacacgttgttcgacctgctctggctggatggcgag
gattaccgcaacaagcccctggagcagcggcgccaggcgctggcacaggtcctgcgcggt
aatggcaatgactgcctgcgctattccgaggacttcaccgacgacccgcgcagcatcctc
gacagcgcctgccggctcggcctggaagggctgatcggcaagcgtgcgggcagcctctat
acggaaaaacgctcctccgactggatcaagctcaagtgcaagcgccggcaggagttcgtg
atcgtcggctacagcgaacccaagggctcgcgctcgtatttcggcgccttgctgctcgcg
ctgcacgacgagaacggcgaactgcgctacgccggcaaagtaggcaccggtttcagcgcg
gccagcctgaagagactgcatcagcagttccagccgctgcagcgcaagacctgcccgctg
cgggagccgcccaagggagccgacgccaagggcgtgacctggctgcgtccggaattgctg
ggcgaagtcgccttcgccgagatcacccgcgaaggcagggtgcgccaggcggtgttccac
ggcctgcgcagtgacaagccggcgcaggcgatagtcgaggaaaaaccgaacaaggctggc
cgcgccgacgctgccagcccgtcacgctcgaacagcggcaatgtcctggaaggcgtgacc
gttacccatcccgagcgagtggtcgatcccaccagcaagctgcgcaagatcgatgtggcg
cgctactacgacaaagccgcggaatgcctgctgccctggctggccgaccgcccggtgtcc
ctggtgcgggcgcccgatggtgtggcgggcgagcagttcttccagcgccatgcctcgcgt
accgggattcccggcgccgaacaactggacccgcagcttgatcctggccacgcaccgctg
ctgcgcatagcctcggccaaggcgttggtgggtgccgcgcagatgggcgcgctggagctg
catacctggaacgccgcgctcgatgacctggagaaacccgaccgcttcgtcctggacctc
gaccccgatccggcgctgccctggcagcggatgatcgaggcgacccagttgaccctcacg
ttgctggatgaactgggcctgacggccttcctcaagaccagcggcggcaagggcatgcat
atcctcgtgccgctacagcggcaccatggctgggatgaagtgaaggacttcgcccatgcc
atcagccgatacatggcccgcctgatgccggaccgcttcagcgccgtatcggggccgaag
aatcgtgtcgggaagattttcatcgattacctgcgcaacagccggggcgccagcacggtg
tgcgtatggtcggtgcgcgcgagagaggggctgccggtctcggtgccgatcagccgcgat
gagcttcccacgctcaagtcggcaaaccaatggaccctcgcgaatgtcgacgagcgtctg
gcaggctccgacccctgggccgaatgggcgaagacccggcaacggttgagcgcgaaaatg
cgcggcaagctggacggctga
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