Prunus mume (Japanese apricot): 103318999
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Entry
103318999 CDS
T03196
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103318999
03015 mRNA surveillance pathway
103318999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103318999
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103318999
mRNA cycle factors
P-body specific factors
103318999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
DUF6149
Motif
Other DBs
NCBI-GeneID:
103318999
NCBI-ProteinID:
XP_008218705
LinkDB
All DBs
Position
LG2:895873..904035
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AA seq
492 aa
AA seq
DB search
MLKDQLDRTKVVLRHLPPSISQTSLVEQIDVFFSGRYNWVAFRPGKRSQKNPSYSRAYID
LKRPEDVIEFAEFFDGHLFVNEKGSQFKVIVEYAPSQRVPKQWSKKDGREGTIFRDPEYL
EFLEFLAKPAENLPSAEIQLERREAERSGAGKDAPIVTPLMDFVRQKRASKAGSRRSLTN
GKTSRRAGGPSSRSPSLATSKRGSERKRNSATMYVLRDTRKNTSAKDKSTYILVPKRDDQ
QPSEKSVTLASAAGTHVLEEESGVSGADAREISHVPANMSQQQSSSAKNMGGTIALKQNL
RRQENGRIIRGILLNKDARQSQSSGIYSAQQIQTSNSDRDKRPPRSQHVQLILKDTNGAP
DYNIVGNDLHGICSEKQEKRIRNKERPDRVVWTPLNRLDGSSASDESLSSAFQPAHSLLD
SSEGSRGDMRFDTSNSLIGENQGSHKHHGRRGTTHGVRDLDGSPVAGEGKHSKRGYGSHE
KQVWVQKSSSGS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaggaccagttggatcgaaccaaggtggtgctacggcacttgccgccttcgatt
tcgcaaacttcacttgtggaacaaatcgacgttttcttttctggccgctacaactgggtc
gctttccgtcccgggaagagaagccaaaagaatccgtcatattctagagcctacattgat
ttgaagaggccagaggatgttattgagtttgctgaattctttgatggtcatctgtttgtt
aatgagaagggcagtcaatttaaagttattgttgagtatgctccttcacaacgcgttcca
aaacagtggtctaagaaggatggtcgtgaaggaaccatattcagagatcccgagtatctg
gagtttcttgaatttcttgcaaagcctgctgagaatcttcctagtgcggagatacaattg
gagagaagagaagcagagcgttctggtgctggaaaggatgctcccatagttacaccatta
atggattttgttcgtcagaaaagggcttccaaggctggatctcggaggtcactgactaat
ggtaaaacgagcagaagagctggcggaccatcatctagaagtccaagtttagcgacgagc
aaacgaggttctgagaggaaaagaaattctgccacaatgtatgttttgagggatactaga
aagaacaccagtgccaaagacaagtcaacttacattctggtacccaagcgcgatgatcag
caaccttctgaaaagtctgtcactttggcatctgcagctggaactcacgttttggaagag
gagagtggagtttctggtgctgatgcgagggagatatctcatgttccggcgaacatgtca
cagcagcagagctcatctgctaaaaacatgggtggtacaattgcactgaaacaaaacctg
cgccgtcaagaaaatgggaggattataagaggaatacttctaaacaaggatgcacgtcaa
agtcagtcttctgggatttactctgcgcaacaaatccagacttcgaattcagatagggac
aaacgacctcctcggtcccaacacgttcaattgattttaaaggatacaaatggcgctcca
gattataatattgttgggaatgacttgcatggtatttgtagcgagaagcaggagaaacgg
ataaggaataaggagagacctgatcgtgttgtatggactcctctaaatcgtttagatgga
tcatctgcaagtgatgagtctttgtcatctgcatttcaacctgctcactcactgctagat
tcttcagaaggaagtcgtggagatatgagatttgacacatcaaattctctgattggggaa
aaccaaggctcccataaacatcatggtcgccgaggaacaacacatggtgttagggatctt
gatggctcaccggttgcaggtgaaggaaaacattcaaaaagaggctatggctcccatgag
aaacaagtgtgggttcagaagtcaagttctggttcttaa
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