Prunus mume (Japanese apricot): 103321269
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Entry
103321269 CDS
T03196
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03008
Ribosome biogenesis in eukaryotes
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103321269
09123 Folding, sorting and degradation
03018 RNA degradation
103321269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103321269
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103321269
03009 Ribosome biogenesis [BR:
pmum03009
]
103321269
03016 Transfer RNA biogenesis [BR:
pmum03016
]
103321269
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103321269
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103321269
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
RNases
103321269
Transfer RNA biogenesis [BR:
pmum03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103321269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
103321269
NCBI-ProteinID:
XP_008221288
LinkDB
All DBs
Position
LG2:complement(15569731..15579226)
Genome browser
AA seq
1083 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVVEEEPVVIDNISIPVDTSKPNPNGLEYDNLYLDMNGIIH
PCFHPEDRPSPSTFDEVFQCMFDYIDRLFAMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFETEGRKLPPKQQSQVVDSNVITPGTQFMAVLSVALQYYIHL
RLNNDPGWKNVKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAANCEGKVKRKAGEFDEKADGEAVAKK
PYQFLNIWTLREYLELEMQIPNSPIEIDSERIVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLFAVYKKEFRALGGYLTDGSKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQADRIK
REKGQLRRGDDARPEVQPDSLVAVSRFHGSRLASGHSPSPYQQSGKFNGEANPRKVARLS
LEGSTIGAAIVEAENSLEGDVDGNKEELKAKLKEVLREKSDLFNSGNADEDKVKLGEPGW
KDRYYEEKFSAKTPEEREAIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD
LKDLDQLNISFDLGSPFKPFNQLLGVFPAASSHALPEQYRKLMTDPNSPIIDFYPVDFEV
DMNGKRFAWQGIAKLPFIDEVRLLAEVEKLEHTLTEEETRRNSVMFEMLFVTSSHPLSVC
IYSLDNRCKQLTDKERVEVKEQIDPKYRDACSEGMNGYISPCTGEPCPPVFRSPVESMED
IMDNQVICAIYRLPDGHKHITRPPAGVIFPKKIVSVGDLKPAPALWHEESGRKPFEKGRR
PFENARRPFENSRRPFDNTRPNPPGSISGRHLEEAAHRLIVNSLQPKVDSNGYGNQMHAL
RPSYVGPPNYPPHHSYTNNGSYAQGHSRMPPPRTIHHPQAQHRASNVNAIPRHGDPGYND
RHSSSAAHHHQNSSHTQQYERSSGQGYNHSGNHQSGGPIYPQRPIPQAPPGVTPVPYQGG
YNNYQNYQPSGPPAQDFDGWVPQVSQNPGRGYGRPQQSGNQYAGLDRRGHRRPPPPQPGY
GHK
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattctatagatggttggcggagaagtatccgctcgtggtggtcgac
gtggtggaagaagaacccgttgtaatcgataacatatcgattccggtggacaccagtaaa
ccaaaccctaatggtcttgaatacgacaatctctacctcgacatgaacgggattattcac
ccctgttttcaccccgaagataggccttctccatcaacctttgatgaggtatttcagtgc
atgtttgactacatagatagactctttgcgatggtgcgacctcgaaagctattatacatg
gctattgatggcgttgcccccagggcaaaaatgaatcaacagcggtctcggcgatttaga
gctgctaaagatgcagcagatgcggcagctgaagaagaacggctacgtgaggagtttgaa
acagaggggagaaaacttccacccaaacagcagtcacaagttgttgattctaatgtcatc
actcctgggactcaatttatggctgttttgtcagttgcattgcaatactatatccatctt
agattaaacaatgaccctggctggaaaaatgttaaggttattctttctgatgcaaatgtc
ccgggtgaaggggaacacaaagttatgtcatatattcgccttcaaagaaatcttcccgga
tatgatccaaatacacgccattgcctgtatggtttggatgccgatttgattatgcttgct
ttggctactcatgaagttcatttttcaattcttcgagaggttgttttcactcctggacag
caagacaaatgcttcctatgcggtcagatgggtcatttagcggcaaattgcgaaggaaag
gtgaaacggaaggccggagagtttgatgagaaagctgatggcgaggctgtggccaagaag
ccataccagtttctcaacatctggactcttagagaatatttggagcttgagatgcaaatt
cccaattccccaattgagattgattctgagcgcatcgtagatgattttatattcatttgt
ttctttgttggcaacgatttcttaccacacatgccaacactagagattcgtgagggcgcg
atcaacttgcttttcgctgtatacaaaaaggaatttagggcattgggtggatatttgact
gatggaagtaagccgaatttgagtcgagtagagcatttcattcaggcagttggttcttat
gaagataaaatatttcagaaaagagctcgattgcatcagcggcaggcagatagaataaag
cgtgagaaggggcaattgagaagaggagatgatgcaaggcccgaagtgcaaccagattca
ttagttgcagtttctcgttttcatggttctcgtcttgcttcaggtcattcgccttccccc
tatcaacaatctggaaaatttaatggtgaagcgaatcctcgaaaggtagcacgtttgtct
ttggaggggtcaaccatcggtgctgctattgttgaagctgagaacagtcttgaaggagat
gtagatggaaacaaagaagaattaaaagcaaagttaaaggaggttcttcgcgagaaatct
gacctttttaactcgggaaatgctgatgaagacaaggttaaattgggagaacctgggtgg
aaagatagatattatgaagaaaagttttctgcaaaaactcctgaagaacgtgaagcaatt
cggaaagatgttgttttgcgatacacggaaggtctatgttgggtgatgcactattattat
gaaggggtttgttcatggcagtggttttatccctatcattatgcaccatttgcatctgat
ctcaaggaccttgaccagctaaatataagttttgatttgggctctccctttaaaccattc
aatcagctgttgggcgtttttcctgctgcaagctcccatgcccttcctgagcagtatagg
aagctgatgactgatccaaactcacctatcattgatttttaccctgttgattttgaagtg
gatatgaatgggaagcggtttgcttggcagggtattgcgaagttgccttttattgatgaa
gtccgtcttcttgctgaggttgaaaaactcgaacatacattaacggaagaggagacccgt
agaaacagtgtgatgtttgagatgctttttgttacatcgtctcatcctctctctgtatgc
atatattctcttgacaatcgctgtaaacagttaacagacaaagagcgagttgaagttaag
gagcagatcgatcccaagtacagggatgcatgcagtgaaggtatgaacggttatatatct
ccttgtactggagagccttgtcctccggtgttccggtctcctgttgaaagcatggaggat
attatggacaaccaagtaatatgtgcgatatacagactaccagatgggcataagcatata
actcgaccacctgcaggtgttatatttcctaagaagattgtgtcagtgggggatttgaag
cctgcacctgctttgtggcatgaagagtctgggcgaaagccatttgaaaagggcagaagg
ccatttgaaaatgccagaaggccatttgaaaattccagaaggccatttgacaataccagg
ccgaaccctcctggaagcatttctggaagacatctcgaggaagcggctcatcgccttatt
gttaatagcttacagcctaaggtagactccaatgggtatggcaatcagatgcatgccctt
cgaccatcttatgtcgggcctccgaattacccaccacaccattcctacaccaataacgga
agctatgcacagggacacagtagaatgccaccacctagaacaatccaccatcctcaagct
caacaccgagcttccaatgttaatgccatcccaagacatggtgaccctggatataatgat
cgacattcttcatcagctgcccaccatcatcagaatagctctcatactcaacagtatgaa
aggagttctgggcaaggatacaaccattcaggaaatcaccagagcggaggaccaatctac
cctcagagacctattccacaagctccaccaggggtcactcctgttccttatcaaggtggg
tacaacaactatcagaattaccaaccatctggaccgcctgctcaagattttgatggctgg
gttccacaggttagccagaacccaggcagagggtatggccgccctcaacagtctggaaac
cagtacgctggattggacagaagaggccataggaggccacctccaccccagcctgggtat
ggccacaagtag
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integrated database retrieval system
