Prunus mume (Japanese apricot): 103323695
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Entry
103323695 CDS
T03196
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103323695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103323695
Enzymes [BR:
pmum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103323695
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103323695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
103323695
NCBI-ProteinID:
XP_008223923
LinkDB
All DBs
Position
LG2:complement(37006398..37023352)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSEETKFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGS
YGLKESVLATCLIDALGMVLQRRQGVSSGGLTIKELNDLLDRLASSENRSEKTSVLSTLI
KKTNAQEMKWIVMIILKDLKLGTSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRH
KRQDIEVGKAVRPQLAMRVGDATIAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRN
FLDHPEYGHAMSDIVIQNVLADRCILDGEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSD
RQLCYVAFDILYVGDTSVIHQSLKERHELLQKFVKPLKGRLEILVPNGGLNTHRSEGEPC
WSLIARSVDDVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDV
LIIGGYYGSGRRGGEVAQFLVGLAERAVPNTYPRRFVSFCRVGTGLSDEDLEAVATKLKP
YLRKYEYPKKAPPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIRSEVFSAPYSLR
FPRIDRVRYDKPWHECLDVESFMELVHSSNGTTQRGTDYGALQDTKTKHKTSSRKEEKRN
LSVVPSHLVQTDVSSVKEDTLLFSNMMFYFVNVPPTNSLDSLHKVVVENGGTFSMNLNNA
VTHCVAADSKGIKYQAAKRHGDIIHFSWVLDCCSQKRLLALQPKYYLFISESSKKKLQEE
IDEFSDSYYWDLDLADIKQLLSNMYRSADSKTINHYKKKYCPMEKWSRFHGCCIYFNPST
HSLKPDWEVLLRFTLRRLKIQVLISGGRVTDSIAHATHLVVLSVQGLDVDFETLLQSFTE
SEKRFLHNKKLHIVGSQWLEDCLERDQRLQEETYSLKPNGLEECSIEEWKHDMDLEEAPS
VVDTLQINNSSSSPNQEGKEIGGKEAPENYRILASPERESKRKRGRPALTSMNKGKTGVN
QARRTRVRIGRKPAKISGNESDEGGSHDNTLLVEEVDKEERKHGMMSDASLDIQENEAIR
DSESLQRDNAAVQEVAEDIRFEDHSYQIPDVKMIEKCNIEDSGKPEKLEVMADPVQAMLF
DMIPSLAMKKVETTNTSIEKEKPAVDLNAGPSKKKKVSYKDVAGELLKDW
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggagaccaagttcagcgtcctatgcagcctcttcaactggatgcaaagaagc
aaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacactttctgtaaacct
gctgattatttcgattcgattcgcctaattcttcccagcctcgaccgcgagcgcggcagc
tatggccttaaggagtctgtgctcgccacctgcctcattgacgctctcggcatggtgctg
caacgtagacaaggagtgagttcaggtggattaacaatcaaggagttaaatgacttgctt
gatcgtttagcttcaagtgaaaataggtcagagaagacttcagttctttctacattgata
aagaagacaaatgcacaggaaatgaagtggattgtcatgattattcttaaagatctgaag
ctgggaactagtgaaaagagcatttttcatgaatttcatccagatgctgaagacttgttt
aatgtcacatgtgacttgaaattggtttgtgaaaagctgagggatagaaatcagcgtcat
aagcgccaggacattgaagttggaaaagctgtacgcccacaactagctatgagagttggt
gatgcaactattgcatggaaaaagcttcatggtaaggaagtggttgttgagtgtaaattt
gatggggatcgcatccaaattcataagaacggaactgaaatacattacttctcaaggaat
tttcttgatcaccctgaatatggacatgcaatgtcagacattgttatacaaaatgttctg
gctgataggtgtattcttgacggtgagatgttggtctgggacacatcttccaatcgtttt
gctgagtttggttcaaatcaagaaatagccaaggcagcaagggatggacttgacagtgat
agacagttgtgctatgttgcatttgatatcctctatgttggagatactagtgtaattcac
cagagcttgaaggaacggcatgagcttctccagaaatttgtgaaacctttgaagggtcgt
ttagaaattttagtacctaatggtggtcttaacactcaccgttctgaaggggaaccttgt
tggtcgcttattgctcgtagtgtggatgatgtcgagaggtttttcaaagaaaccatcgaa
aatagagatgaggggattgttttgaaggaccttggttctaaatgggaacctagtgatcgg
agtggaaagtggttaaaattaaaaccagattacattcgtgcaggctctgatttagatgtt
cttatcataggcggatactacggttctggacgtcgtggaggggaggttgctcaattcttg
gtgggtcttgctgaacgtgcagtaccaaatacatatcctagaagatttgtatccttttgc
agagtgggcactggactttctgatgaggatctagaagctgttgccaccaaattaaagcct
tatttgaggaaatatgagtacccaaaaaaggctccaccaagtttttatcaagtaacaaac
aattcaaaagagagaccagatgtttgggttgaaagccccgagaaatcaataatactttct
ataacgagtgacatcagaactataaggtctgaggttttttctgcaccatacagcctgaga
tttccacgtattgatcgagttagatatgataaaccttggcatgaatgtcttgatgtggaa
tcatttatggagcttgtacattcaagcaatgggaccacacaaaggggaacggattacggt
gctctgcaggatactaaaacgaaacacaagacatcctctagaaaggaagaaaaaagaaat
ctttctgttgttccctctcatttagttcagactgatgtttccagcgtcaaggaggacaca
ttactattttcaaatatgatgttttactttgttaatgtgcctcccactaattctcttgat
tccttgcacaaagttgttgttgagaatgggggtactttctctatgaatttgaataatgca
gttacacactgtgttgcagctgatagcaaagggattaaatatcaggcagcaaagcgtcat
ggagatataattcatttctcttgggtgttggattgttgttctcaaaagagacttcttgcc
ttacagccaaagtactatctcttcatatctgaatcttcaaaaaagaagttacaagaagaa
attgatgaattttctgactcgtactactgggatcttgaccttgcagacatcaagcagctt
ttaagcaacatgtatagatctgcggattccaaaactatcaaccattacaagaaaaaatac
tgtccaatggagaaatggtctcgctttcatggctgctgcatttactttaacccatcaact
cattccttgaaaccggattgggaagtccttttacgattcacactcagaaggttgaagatt
caagttctcataagtggtggcagagtcactgacagtattgctcatgcgactcatttggta
gtcttgtcagtgcagggtcttgatgtcgattttgaaactttattgcaaagtttcactgaa
tcagagaaacgatttctgcataacaaaaagttgcatattgttggatctcaatggttggaa
gactgcttggaaagggaccagagactgcaagaagaaacatatagcttaaaacccaatggg
ttggaagaatgcagcattgaagagtggaaacatgacatggatctagaagaagcaccctct
gttgtggacactctgcaaatcaacaattcttcttcttctcctaaccaagaaggaaaagag
ataggaggcaaagaagctccagaaaactataggatcttggcctcacctgagagggaaagc
aaaaggaaaagaggaagacctgctctcacaagcatgaacaaaggaaaaactggtgtcaac
caagctcggagaacacgggtgcgcattggaaggaagcctgctaaaatatcaggaaatgag
tcagatgaaggtggctctcatgataacacattacttgtggaagaggttgataaggaagaa
aggaaacatggaatgatgagtgacgcaagtttagacatccaagaaaatgaagcaattaga
gattctgaatcattacaaagagacaatgcagctgtgcaggaggttgctgaagacattagg
tttgaggaccattcttatcaaattcctgatgtcaaaatgattgagaagtgtaatatcgaa
gacagtggaaagccggagaaacttgaagttatggctgatcctgttcaagccatgttgttt
gacatgattccaagtcttgctatgaagaaagttgaaactacaaatacgagtattgaaaag
gaaaaaccagcagtagatctgaatgcaggaccttcaaagaaaaagaaagttagctacaag
gatgttgctggtgagctgctcaaggattggtaa
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