Prunus mume (Japanese apricot): 103324504
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Entry
103324504 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103324504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103324504
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103324504
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103324504
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103324504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103324504
NCBI-ProteinID:
XP_008224793
LinkDB
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Position
LG3:complement(790681..797090)
Genome browser
AA seq
1002 aa
AA seq
DB search
MASEKLLLSRENPRTLAFPHDRLIAASSAATGTKAMPNNELAQKPQPPTPIVDRFRALLK
QRDDDLRVSPEDDVSPPSTEEIVQLYEMVLAELIFNSKPIITDLTIIAGEQRDHGKGIAD
AICARILEVPVEHKLPSLYLLDSIVKNIGRDYAKYFSSRLPEVFCEAYRQVNPNQYPAMR
HLFGTWSAVFPPSVLRRIEEQLQFSPQVNQQSSGSTPLRASESPRPTHGIHVNPKYLRQL
DSSNVDSVGSQRVNSTGSVSHSPFSLGSNRLHPSSTTRLARSSSPSDIGLDRSLPSAVDE
FAAENSPKRFGERASPSNSVFDYRLGGAIGRDEEPNELRGKRYLDGSQKRFDTSVTYNNL
SNGLEHQRPRALIDAYGKDSGDRSLNDKPLVGRLGLNGLDHKATQMSWQNTEEEEFDWED
MSPTLADQRSNDYMPSTAPPSRSYRARPSLGTLNVSPLESDSRSTWSTQAHLPLAEQSSV
ITEDPAPLLGFSRGSTSTVSRFQSETNHSLGSRYPQEAWNIPFHLSQSSQNLLNARGRGR
NFQMPFVASGVSSGGEKMSAFVDKLPDVDARLHGPVAVASRMGSCSVDAGNADSRPIIPV
SMGSRPPVNIHNSHPPPGHSIFALQNQRSQYGSINYSNTVKNQAPYNSLYVPEQQLDGYE
NKLLRSTKLTQLTSQNARPMPVNQRNQVQASPLQPQFLPPQEARENFISSAETPGPPYLG
LPSLNHGYNLQGHGGAVSTVMANPVPRIPYVPNSALHLRGEALPPLPPGPPPPSSQGILS
IQNPGPVVSSNQPGSAYSGLFSSLMAQGLISLTNQSTVQDSVGIEFNADLLKVRHESVIK
ALYSDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVNTSMWLSGAE
ALGTDAVPGFMPAETIVEKKSDEEXGEPFDDFYSDETEEWMYKGAVYLNAPDGSTGGMDR
SQLGPIVHAKCRSESSVVSSGGLGQDEVGIIEEGSQRKRLRS
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggaaaagctcttactttcccgagaaaaccctagaaccctcgctttcccgcac
gaccgcttaatcgccgcctccagcgcagccacgggtacgaaggccatgcccaacaatgag
ttagctcagaagcctcaacctccgactccgatagtcgaccgcttcagggctctgttgaag
caacgagacgatgacctaagggtttcgcccgaggacgacgtgtcgccgcccagcaccgag
gaaattgtgcagctttacgaaatggtcttggcggagctcatcttcaattccaaacccatc
attaccgatctcaccatcatcgccggcgagcagagagaccacggaaagggcatcgccgac
gccatctgcgcccggattctcgaggtcccagttgagcacaaactgccttcactatatcta
ttagatagtattgtgaagaatattggccgggattatgccaagtacttctcttcccgccta
cctgaggtattttgcgaggcatacaggcaagtaaaccctaaccagtatcctgccatgcgc
catctctttggcacttggtcagcagtctttccaccttcagtccttcgcaggattgaagag
cagctgcagttttctccacaagtaaaccaacaatcatcaggatcaactcctctgagggct
tctgaatctcctcgaccgactcatggcatccatgtcaatccaaagtatttacgtcaattg
gatagctcaaatgtagatagtgttggatcccaaagagtgaactcaactggaagtgtgagt
cattcacctttttccctgggatccaatcggttgcacccatcttcaactactaggcttgca
agatcatcatcaccttcagatattgggcttgatagatctctaccatcggcagttgatgaa
tttgcagcagagaattcccctaaaaggtttggtgaaagggcatctccgtctaattctgtg
tttgattatagacttggtggagcaattggtagagacgaggagccgaatgaattgcgggga
aagcgctatcttgatggtagtcagaaacgatttgacacttctgttacatataataacctc
agtaatggactagaacatcagagaccaagagctctgattgatgcatacgggaaagacagt
ggagatagaagtttaaatgataaacctctggttgggcggctgggcctgaatggtctagac
cataaggcaactcaaatgtcgtggcagaataccgaagaggaagagtttgattgggaagac
atgagcccaactttagcagaccagaggagtaatgattacatgccttcaactgcaccacct
tctagaagctacagggcaaggcccagccttggaacactgaatgtgagccccttggagtca
gatagtaggagtacttggtctactcaggcacatctacctttagccgaacagtcctctgtt
ataactgaagatccagcccccctgcttggtttcagtcgtggatcaacaagtacagtatct
cgattccaatctgagacaaatcatagtctgggttctcgctaccctcaagaagcttggaat
attcctttccatctctctcagtcttcgcagaatctccttaatgccagaggaaggggtagg
aatttccagatgccctttgtggcaagtggtgtatcttcaggtggtgagaaaatgtctgcc
tttgttgacaagcttccagatgttgatgcacgactgcatgggcccgtagctgttgcatca
agaatgggttcttgtagtgttgacgctggtaatgctgactctcgacccattataccagtg
tcaatgggttcaaggcctccagtaaacatacataattctcaccctcctcctggccactca
atttttgcattgcagaaccagaggagtcagtatggttcaataaattatagcaacactgta
aaaaatcaagctccatataattctttatatgtgcctgagcagcagttggatggttatgaa
aataagttgttgaggtcgacaaagttaactcaattgaccagtcagaatgccaggccgatg
cctgttaatcagcgaaaccaggtgcaggccagtcctttacagccacaatttcttccaccc
caggaggcacgagagaattttatttcatctgcagaaactcccgggccaccttatttgggg
ttaccatccttaaatcacggatacaatttgcaagggcatggtggtgctgttagcacagtt
atggcaaatcctgtacctcgtatcccctatgtcccaaacagcgctttgcatttacgagga
gaagccttgccacctctaccaccaggtccgcctcccccttcctcacaaggcatactttcc
attcaaaaccctggtccagttgtctctagcaaccagcccgggagtgcatattctggtttg
tttagttctctcatggctcaaggtttgatctcattgacaaatcaaagcactgtccaggat
tctgtaggaattgagtttaatgccgaccttctcaaggtgcgtcatgaatctgtaataaag
gccctatatagtgatctcccaagacaatgcacaacctgtggccttaggttcaagtgccaa
gaagagcacagtagtcatatggattggcatgtaacaaagaaccgtatgtctaaaaaccgt
aagcagaagccctctcgcaaatggtttgtaaatacgagcatgtggctcagtggtgcagag
gccttgggtactgatgcagtccctggatttatgcctgctgagaccattgtggaaaagaag
agtgatgaagaanaaggagaaccttttgatgatttttatagtgacgagacagaggaatgg
atgtataaaggtgctgtgtacttgaatgcacctgatggatcaacaggaggcatggatagg
tcacagttaggtcctatagtgcatgctaaatgcagatcggagtcaagcgtggtatcctct
ggaggtttgggacaagatgaagtgggaattattgaagagggtagtcaaagaaaacgattg
cggagttag
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