Prunus mume (Japanese apricot): 103324920
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Entry
103324920 CDS
T03196
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03022
Basal transcription factors
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103324920
09124 Replication and repair
03420 Nucleotide excision repair
103324920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103324920
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103324920
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103324920
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103324920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
103324920
NCBI-ProteinID:
XP_008225258
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All DBs
Position
LG1:complement(6164292..6167392)
Genome browser
AA seq
420 aa
AA seq
DB search
MNNGEQRRLNGEAEEDEDEDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK
HAQYRRRLRAASTARIQKGLIRYLYVVIDLSKAAAEMDFRPSRMGVVAKHVEAFIREFFY
QNPLSQVGLVTIKDGVAHCLTDLGGSPNSHVQALMGKLECSGDSSLQNALDLVHGYLEQI
PSYGHREVLILYSALSTCDPGDIMETIQKCKQSKIRCSVIGLSAEIFICKHLCQETGGLY
YIALDEPHLRELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKVGGGY
TCPRCKARVCDLPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSLLIDQQNKFPRA
CFGCQQSLLNPGNKPSLRVACPKCKQHFCLDCDIYIHESLHNCPGCESARHSKIPNANKG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgagcaaagacgcttaaatggagaggcagaggaagacgaagacgaagac
gatgcaaacaatggaggcctcgctgcttgggaacgagcctacgctgatgagaggtcatgg
gagtcactgcaagaggacgagtctgggcttcttcagcccattgacaaccagagccttaaa
catgctcagtaccgtcgtcgccttcgtgctgcctccactgctcgaattcaaaagggtctt
attcgttatctttacgttgttatcgacctctctaaggctgctgcggaaatggattttcga
ccaagccgaatgggtgtggttgcaaaacatgttgaggctttcattagagagtttttttac
cagaatccgcttagtcaagttggcctggtgactataaaagacggtgttgctcattgctta
accgatcttggtggcagtcccaattctcatgttcaagctttgatgggtaagctggaatgc
tcaggtgactcgtccctacagaacgcattggatcttgtacatgggtatctggaacagatt
ccatcatatggtcatagagaagttctgatcttatattcagctctcagtacctgtgatcca
ggagatataatggaaactatccagaaatgtaagcaatccaaaattaggtgctcagttatt
ggtctctcagcagaaattttcatatgcaaacatctatgccaggaaactggtggcttgtac
tatattgcattggatgagccacacttaagagagttaatcttggaacatgcacctccacca
ccagcaatagcagaatttgcaattgctaatttgataaagatgggcttcccacaaagagcg
gcagagggctctgtggcaatttgttcatgtcacaaggaggcaaaggtcggaggtggttac
acttgtccaaggtgcaaggcacgtgtatgtgacctacctactgaatgtcgcatttgtggg
ttgacgctcatttcttctcctcatttggcaaggtcttatcatcatcttttccccatcgtg
ccatttgatgaggtctctccatcactactaattgatcaacaaaacaagtttcctagagct
tgttttggctgccaacaaagtcttctcaatcccggaaacaaacccagccttcgtgttgct
tgtccaaaatgcaaacagcacttctgccttgattgtgacatttatattcatgaaagcttg
cataactgcccaggttgtgagagcgctaggcattccaagataccaaatgctaacaaagga
tga
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